Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l19f
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41625-5|AAA83327.1|  700|Caenorhabditis elegans Suppressor of a...    30   1.4  
AY091467-1|AAM44123.1|  700|Caenorhabditis elegans SUR-5 protein.      30   1.4  
AF067942-3|AAL11486.1|  351|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF067942-2|AAG45574.1|  403|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z83222-1|CAB05712.1|  410|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U41559-5|AAC24258.1|  217|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U41625-5|AAA83327.1|  700|Caenorhabditis elegans Suppressor of
           activated let-60ras protein 5 protein.
          Length = 700

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 221 ETVCGFVPNTWSSSISTRGFSVSASATLSDNIIF 120
           +TVCGFVPNT+ + ++    +   +A  S ++ F
Sbjct: 182 DTVCGFVPNTYDTLVAVFATAAVGAAWCSASVDF 215


>AY091467-1|AAM44123.1|  700|Caenorhabditis elegans SUR-5 protein.
          Length = 700

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 221 ETVCGFVPNTWSSSISTRGFSVSASATLSDNIIF 120
           +TVCGFVPNT+ + ++    +   +A  S ++ F
Sbjct: 182 DTVCGFVPNTYDTLVAVFATAAVGAAWCSASVDF 215


>AF067942-3|AAL11486.1|  351|Caenorhabditis elegans Hypothetical
           protein ZK6.7b protein.
          Length = 351

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 282 FTKITDGGFVLAVRRS*IGTRNGLWFRAKYLVVFDIHSWL 163
           +T  TD G++L + R   G  N  W   K  VVF  H  L
Sbjct: 43  YTVATDDGYILEMHRIPFGKTNVTWPNGKRPVVFMQHGLL 82


>AF067942-2|AAG45574.1|  403|Caenorhabditis elegans Hypothetical
           protein ZK6.7a protein.
          Length = 403

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 282 FTKITDGGFVLAVRRS*IGTRNGLWFRAKYLVVFDIHSWL 163
           +T  TD G++L + R   G  N  W   K  VVF  H  L
Sbjct: 43  YTVATDDGYILEMHRIPFGKTNVTWPNGKRPVVFMQHGLL 82


>Z83222-1|CAB05712.1|  410|Caenorhabditis elegans Hypothetical
           protein E01B7.1 protein.
          Length = 410

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/59 (20%), Positives = 33/59 (55%)
 Frame = +2

Query: 353 VSLVMTVMSLEMKVTMIKLVRMIKTEPLKKKLQTMYYQKHQILTLIIHQTEKVMIIVLP 529
           +++  T+ ++  K+T  +LVR ++ +  KK       +++Q   +  +++E + +I +P
Sbjct: 137 ITVDSTMRAVRAKITPRELVRKVENDTPKKSALIFDIRQNQSDAIFYNRSEMITVIQVP 195


>U41559-5|AAC24258.1|  217|Caenorhabditis elegans Hypothetical
           protein C26B2.2 protein.
          Length = 217

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 212 CGFVPNTWSSSISTRGFSVSASAT 141
           CGFVP   SSS + +  S+S+SAT
Sbjct: 74  CGFVPQMMSSS-TVKNLSLSSSAT 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,234,305
Number of Sequences: 27780
Number of extensions: 128950
Number of successful extensions: 342
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)