Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l19f
         (586 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   5.1  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   5.1  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    21   6.7  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 133 SDKVADALTLKPRVDIEDDQVFGTKPQTVSR 225
           S+K+ D  TLK  +D+  D+ F T  +  +R
Sbjct: 397 SNKI-DETTLKHLIDVASDRFFITDGEKAAR 426


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 133 SDKVADALTLKPRVDIEDDQVFGTKPQTVSR 225
           S+K+ D  TLK  +D+  D+ F T  +  +R
Sbjct: 397 SNKI-DETTLKHLIDVASDRFFITDGEKAAR 426


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 403 KTSQDDKDGTPEEK 444
           K S + K+G+PEEK
Sbjct: 8   KRSHNGKNGSPEEK 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,038
Number of Sequences: 438
Number of extensions: 1694
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)