Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l19f
         (586 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g08040.1 68416.m00982 MATE efflux family protein low similari...    28   5.3  
At3g52290.1 68416.m05747 calmodulin-binding family protein simil...    27   9.2  

>At3g08040.1 68416.m00982 MATE efflux family protein low similarity
           to enhanced disease susceptibility 5 [Arabidopsis
           thaliana] GI:16589070; contains TIGRfam profile:
           TIGR00797: MATE efflux family protein, Pfam profile
           PF01554 Uncharacterized membrane protein family
          Length = 526

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -2

Query: 399 IVTFISRLITVITKLTQIFSRYYLTFVLFTDFAQ*INV 286
           I  F+ RL  +   +  + S+Y++T +LF   A+ +N+
Sbjct: 262 IFIFVLRLGIIGAAIAHVISQYFMTLILFVFLAKKVNL 299


>At3g52290.1 68416.m05747 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 430

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 245 SEDPKSARETVCGFVPNTWSSSISTRGFSVS 153
           SE P + R + CG +P+T      T  FS S
Sbjct: 337 SEQPCNRRHSTCGSIPSTRDDESFTSSFSQS 367


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,621,038
Number of Sequences: 28952
Number of extensions: 114758
Number of successful extensions: 334
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)