BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10l19f (586 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g08040.1 68416.m00982 MATE efflux family protein low similari... 28 5.3 At3g52290.1 68416.m05747 calmodulin-binding family protein simil... 27 9.2 >At3g08040.1 68416.m00982 MATE efflux family protein low similarity to enhanced disease susceptibility 5 [Arabidopsis thaliana] GI:16589070; contains TIGRfam profile: TIGR00797: MATE efflux family protein, Pfam profile PF01554 Uncharacterized membrane protein family Length = 526 Score = 27.9 bits (59), Expect = 5.3 Identities = 11/38 (28%), Positives = 22/38 (57%) Frame = -2 Query: 399 IVTFISRLITVITKLTQIFSRYYLTFVLFTDFAQ*INV 286 I F+ RL + + + S+Y++T +LF A+ +N+ Sbjct: 262 IFIFVLRLGIIGAAIAHVISQYFMTLILFVFLAKKVNL 299 >At3g52290.1 68416.m05747 calmodulin-binding family protein similar to SF16 protein [Helianthus annuus] GI:560150; contains Pfam profile PF00612: IQ calmodulin-binding motif Length = 430 Score = 27.1 bits (57), Expect = 9.2 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = -3 Query: 245 SEDPKSARETVCGFVPNTWSSSISTRGFSVS 153 SE P + R + CG +P+T T FS S Sbjct: 337 SEQPCNRRHSTCGSIPSTRDDESFTSSFSQS 367 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,621,038 Number of Sequences: 28952 Number of extensions: 114758 Number of successful extensions: 334 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 333 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 334 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1151426952 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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