BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10l18r (743 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 226 3e-60 SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 214 1e-56 SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 27 2.1 SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 27 2.8 SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 27 2.8 SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb... 26 4.9 SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 4.9 SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 25 8.6 SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.6 >SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces pombe|chr 1|||Manual Length = 270 Score = 226 bits (552), Expect = 3e-60 Identities = 105/149 (70%), Positives = 125/149 (83%) Frame = -3 Query: 738 KVXKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVED 559 K+ +EL IC D+L +L+KHLIP A++ ESKVFY KMKGDYYRYLAE A GE R + Sbjct: 90 KIEQELDTICQDILTVLEKHLIPNAASAESKVFYYKMKGDYYRYLAEFAVGEKRQHSADQ 149 Query: 558 SQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELD 379 S + Y+ A EI+ A++ PTHPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELD Sbjct: 150 SLEGYKAASEIATAELAPTHPIRLGLALNFSVFYYEILNSPDRACYLAKQAFDEAISELD 209 Query: 378 TLNEDSYKDSTLIMQLLRDNLTLWTSDTQ 292 +L+E+SYKDSTLIMQLLRDNLTLWTSD + Sbjct: 210 SLSEESYKDSTLIMQLLRDNLTLWTSDAE 238 >SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces pombe|chr 1|||Manual Length = 270 Score = 214 bits (522), Expect = 1e-56 Identities = 99/149 (66%), Positives = 121/149 (81%) Frame = -3 Query: 738 KVXKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVED 559 K+ EL +IC+DVL +L+KHLIP A+ ESKVFY KMKGDYYRYLAE GE + Sbjct: 89 KIEDELSDICHDVLSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFTVGEVCKEAADS 148 Query: 558 SQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELD 379 S +AY+ A +I+ A++ PT P+RLGLALNFSVFYYEIL+SP+ AC LAKQ FD+AI+ELD Sbjct: 149 SLEAYKAASDIAVAELPPTDPMRLGLALNFSVFYYEILDSPESACHLAKQVFDEAISELD 208 Query: 378 TLNEDSYKDSTLIMQLLRDNLTLWTSDTQ 292 +L+E+SYKDSTLIMQLLRDNLTLWTSD + Sbjct: 209 SLSEESYKDSTLIMQLLRDNLTLWTSDAE 237 >SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharomyces pombe|chr 1|||Manual Length = 398 Score = 27.5 bits (58), Expect = 2.1 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = +1 Query: 139 LASASVMIPRQTTFSNVTRFLI-NTDENKCVCWGECGEILVVAA 267 L + SV+I +TFS V+R L +T + VCW C L+ A+ Sbjct: 43 LVNGSVVIWDLSTFS-VSRVLTGHTRAIQSVCWSSCDRFLLTAS 85 >SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 1207 Score = 27.1 bits (57), Expect = 2.8 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Frame = -3 Query: 612 RYLAEVATG-ETRHSVVEDSQKAYQDAFEISKAKMQPTHP-IRLGLALNFS 466 RY+ ++ E R ED+++A + ++ + A +QP H I L LA+N S Sbjct: 1049 RYIVALSCELERRRLGEEDTKRALELSYYFASADLQPMHSIIALRLAINAS 1099 >SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr 1|||Manual Length = 1778 Score = 27.1 bits (57), Expect = 2.8 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Frame = -3 Query: 693 LLDKHLIPKASNPESKVFYLKMKGDYYR---YLAEVATGETRHSVVEDS 556 +++K IP++ E+K Y + GD+ +L E A E H V+ D+ Sbjct: 1608 MIEKLCIPESWLNEAKALYARYVGDHLNELYFLQEAALYEDAHKVLLDT 1656 >SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 162 Score = 26.2 bits (55), Expect = 4.9 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%) Frame = -1 Query: 110 FAADLPVPSKIKCCVIFDGFVF-LYLHWIADI 18 FA LPVP K C F F+ L +W+ D+ Sbjct: 31 FAPALPVPINDKVCHFFVFFLLTLVFYWVFDL 62 >SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 817 Score = 26.2 bits (55), Expect = 4.9 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 2/81 (2%) Frame = -3 Query: 555 QKAYQDAFEISKAKMQPTHPIRL-GLALNF-SVFYYEILNSPDKACQLAKQAFDDAIAEL 382 Q+ D E + P H L F S Y ++ D QLA Q F ++ Sbjct: 415 QRLVADLHEFYNSVKGPAHSFETEDPVLKFVSQSYDDLFPYMDNFIQLAVQLFYHISKKV 474 Query: 381 DTLNEDSYKDSTLIMQLLRDN 319 + L +++ S ++Q ++DN Sbjct: 475 NCLYVEAFSSSDAVLQRIQDN 495 >SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces pombe|chr 1|||Manual Length = 369 Score = 25.4 bits (53), Expect = 8.6 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = +3 Query: 48 YKTVKDDTTFNFRRNGKVRCERLLTFLQATARVGFGDDTAPD 173 ++T D +F + G++R RL+TF GFG PD Sbjct: 237 FETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPD 278 >SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 85 Score = 25.4 bits (53), Expect = 8.6 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = +1 Query: 502 CGLHFRLADFKSILVCFL*ILYNRMSGFSCGHFC 603 C L+F L + K+ L+ I+Y + GFS H C Sbjct: 46 CLLNFSLRENKNYLI----IVYLPIEGFSANHMC 75 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,887,290 Number of Sequences: 5004 Number of extensions: 57975 Number of successful extensions: 187 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 183 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 187 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 353266144 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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