Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10l18r
(743 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.) 196 2e-50
SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0) 190 1e-48
SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 9e-12
SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44) 39 0.005
SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12) 31 0.99
SB_10602| Best HMM Match : RVT_1 (HMM E-Value=1.3e-10) 30 1.7
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_3346| Best HMM Match : Spectrin (HMM E-Value=0.012) 28 9.2
>SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 309
Score = 196 bits (477), Expect = 2e-50
Identities = 101/163 (61%), Positives = 118/163 (72%), Gaps = 4/163 (2%)
Frame = -3
Query: 735 VXKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDS 556
+ EL E+C VL LL+ LIP A + ESKVFYLKMKGDYYRY EVA + R VV+ +
Sbjct: 65 IENELNEVCETVLKLLESKLIPNAQSTESKVFYLKMKGDYYRYEGEVAGADRRREVVQKA 124
Query: 555 QKAYQDAFEISKA--KMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAEL 382
KAY +A EI++ K+ PT PIRLGLALNFSVFYYEI+ +AC LAK+AFDDAIAEL
Sbjct: 125 MKAYSEAQEIAEKDPKLPPTDPIRLGLALNFSVFYYEIVEDSKQACDLAKKAFDDAIAEL 184
Query: 381 DTLNEDSYKDSTLIMQLLRDNLTLWTSDTQG--DGDEPAEGGD 259
DTL+ED YKDSTLIMQLLRDNLT+ Q + E AE GD
Sbjct: 185 DTLSEDQYKDSTLIMQLLRDNLTVVEKALQAYKEAKEAAETGD 227
Score = 138 bits (335), Expect = 3e-33
Identities = 69/103 (66%), Positives = 86/103 (83%), Gaps = 4/103 (3%)
Frame = -3
Query: 573 SVVEDSQKAYQDAFEISKA---KMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAF 403
+VVE + +AY++A E ++ K+ PT PIRLGLALNFSVF+YEI + ++AC+LAKQAF
Sbjct: 207 TVVEKALQAYKEAKEAAETGDGKLAPTDPIRLGLALNFSVFHYEIQENQEEACKLAKQAF 266
Query: 402 DDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGD-GDE 277
DDAIAELD+LNED YKDSTLIMQLLRDNLTLW+S+ Q D GD+
Sbjct: 267 DDAIAELDSLNEDQYKDSTLIMQLLRDNLTLWSSENQEDQGDD 309
>SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)
Length = 248
Score = 190 bits (462), Expect = 1e-48
Identities = 91/156 (58%), Positives = 117/156 (75%), Gaps = 3/156 (1%)
Frame = -3
Query: 735 VXKELREICYDVLGLLDKHLIPKAS---NPESKVFYLKMKGDYYRYLAEVATGETRHSVV 565
+ EL C +VL +L+ +L+ N E+KVFYLKM+GDY+RYL EVA G++R +
Sbjct: 92 ITNELNGKCAEVLDILENYLLKDGQDDINTEAKVFYLKMRGDYHRYLVEVAEGDSRKENI 151
Query: 564 EDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAE 385
E S++AY+DA ++ P+HPIRLGLALNFSVFYYEI N P +AC+LAK+AFDDAIA
Sbjct: 152 EKSREAYKDA-SAKAEELSPSHPIRLGLALNFSVFYYEIENKPPEACKLAKEAFDDAIAV 210
Query: 384 LDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 277
LD L ++SYKDSTLIMQLLRDNLTLWTS+ +G +
Sbjct: 211 LDNLKDESYKDSTLIMQLLRDNLTLWTSEQDQEGQD 246
>SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 67.7 bits (158), Expect = 9e-12
Identities = 29/51 (56%), Positives = 42/51 (82%)
Frame = -3
Query: 735 VXKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGE 583
+ KEL+++C +VLG+L++ LIP A + E+KVFY K+KGDYYRYLAE + G+
Sbjct: 166 IEKELKDLCKEVLGILER-LIPGAEDEENKVFYFKLKGDYYRYLAEFSHGQ 215
>SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)
Length = 251
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = -3
Query: 735 VXKELREICYDVLGLLDKHLIPKASNPESKVFYLKM 628
+ +EL+ IC ++L LLD LI + + ESKVFY K+
Sbjct: 90 IEEELKTICGEILSLLDDSLIKNSQSEESKVFYNKI 125
>SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)
Length = 979
Score = 31.1 bits (67), Expect = 0.99
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = -3
Query: 402 DDAIAELDTLNEDSYKDSTLIMQL---LRDNLTLWTSDTQGDGDEPAEG 265
DD + D ++DS + + QL L+ + LW S TQGD D A G
Sbjct: 850 DDDDFDTDEWSDDSDAEGSAAGQLKLCLKREILLWKSGTQGDADRRATG 898
>SB_10602| Best HMM Match : RVT_1 (HMM E-Value=1.3e-10)
Length = 416
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = -3
Query: 702 VLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEIS 523
+LGL++ H+ PK+ + ++F +Y+ +L V T+ +E + Y + S
Sbjct: 116 ILGLIESHIDPKSFH--HRMFLAACCLEYFGFLRSVEFTVTQEKCIEQNMPLYAVFIDFS 173
Query: 522 KA 517
KA
Sbjct: 174 KA 175
>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4924
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = -3
Query: 594 ATGETRHS-VVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNS 439
A GETR + D+ +A +D KA+ Q + ALN S+F++E++NS
Sbjct: 4020 ALGETRRKRSLVDTPEANED-----KAQHQVPDAEKCQFALNASLFFFEVINS 4067
>SB_3346| Best HMM Match : Spectrin (HMM E-Value=0.012)
Length = 983
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -3
Query: 459 YYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGD 286
YY I + K Q FDD + +ED+ +D+T ++L+ T+D GD
Sbjct: 505 YYNIPYNKPKKNDFKLQLFDDYKQAVTQASEDTLRDATTAIELMNAP----TTDVHGD 558
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,949,860
Number of Sequences: 59808
Number of extensions: 451479
Number of successful extensions: 1384
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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