Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l18f
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...   181   8e-47
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...   180   2e-46
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    32   0.053
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    31   0.093
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    29   0.37 
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    28   0.87 
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    27   2.6  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    27   2.6  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   2.6  
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p...    27   2.6  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    26   4.6  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    26   4.6  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   6.1  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    25   6.1  
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    25   6.1  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    25   8.1  

>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  181 bits (440), Expect = 8e-47
 Identities = 90/144 (62%), Positives = 110/144 (76%), Gaps = 3/144 (2%)
 Frame = +3

Query: 147 SVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSW 326
           +  +E+ V  AKLAEQAERY+ M   MK V  T  EL+ EERNLLSVAYKNV+GARR+SW
Sbjct: 3   TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSVAYKNVIGARRASW 62

Query: 327 RVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVF 500
           R++SSIEQK E  G+  + ++ KEYR K+E+EL  IC D+L +L+KHLIP A++ ESKVF
Sbjct: 63  RIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESKVF 122

Query: 501 YLKMKGDYYRYLAEVATGETR-HS 569
           Y KMKGDYYRYLAE A GE R HS
Sbjct: 123 YYKMKGDYYRYLAEFAVGEKRQHS 146


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  180 bits (437), Expect = 2e-46
 Identities = 89/140 (63%), Positives = 108/140 (77%), Gaps = 2/140 (1%)
 Frame = +3

Query: 144 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSS 323
           MS  +E  V  AKLAEQAERY++M   MK+V  +  +LS EERNLLSVAYKN++GARR+S
Sbjct: 1   MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGARRAS 60

Query: 324 WRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKV 497
           WR+ISSIEQK E  G+ R+  + KEYR K+E EL +IC+DVL +L+KHLIP A+  ESKV
Sbjct: 61  WRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKV 120

Query: 498 FYLKMKGDYYRYLAEVATGE 557
           FY KMKGDYYRYLAE   GE
Sbjct: 121 FYYKMKGDYYRYLAEFTVGE 140


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 32.3 bits (70), Expect = 0.053
 Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 2/104 (1%)
 Frame = +3

Query: 126  PLPSSTMSVDKE--ELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKN 299
            P+ S TMS      E + R +     + Y+ MA  + E  E   ++ +    LLS  Y N
Sbjct: 2997 PIMSITMSDSSAYGEELMRERFEHLLKAYEKMALMVAEQEEFNAKIEDMALKLLSEKYDN 3056

Query: 300  VVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREIC 431
                    +R+ + +E+          +  EY   +E+ L++ C
Sbjct: 3057 EAYQAELFYRLSNCVEKVLHNKISITDLKTEYEEILEQTLKKEC 3100


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 31.5 bits (68), Expect = 0.093
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
 Frame = +3

Query: 147 SVDKEELVQRAKLAEQAERYDDMAAAMKEVT--ETGVELSNEERN-LLSVAYKNVVGARR 317
           SV    + ++ K  ++ E + ++ + +K V+  ET  E+SN+E N LL + YK V     
Sbjct: 3   SVSNVSVNEQGKFNDKEEGFSNLKS-LKHVSHSETDFEVSNDEDNQLLELGYKPVFKREF 61

Query: 318 SSWRVIS 338
           S+W   S
Sbjct: 62  STWATFS 68


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
 Frame = +3

Query: 153 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRV 332
           +K+E  QR  +  Q  R D M    +    +G   S+ +    SV+ +    +R  S+  
Sbjct: 320 EKQEKEQRLFMLAQKAREDRMG---RNAASSGP--SHAKPRSTSVSSEERSRSRAGSFSH 374

Query: 333 ISSIEQKTEGSE---RKQQMAKEYRVKVEKELR 422
            S  E + E SE   R+Q++ +E R + EK+LR
Sbjct: 375 HSESENEDEDSEAFRRRQELRRERRRQAEKDLR 407


>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = +1

Query: 37  FSAREKLILC-----LNLLVQIHFSPSDKGISELVLFHRPRCPSTRKNWCNVPNWPNKLS 201
           FS +E  ILC     L+L+V  +    ++  S+ + F +PR     K   N   WPN+ S
Sbjct: 39  FSDKENSILCKQLKELDLVVSSNKEFLNEKTSDQISFLKPRETVVEKKLANGSIWPNETS 98

Query: 202 DM 207
            +
Sbjct: 99  HL 100


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 294 KNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVE 410
           KN+     S+ R +SS + K   +E +  M  +Y  K+E
Sbjct: 350 KNLENDEESTLRALSSFQSKIRNAEDEDVMDSQYGSKIE 388


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 3/110 (2%)
 Frame = +3

Query: 153 DKEELVQRAKLAEQA-ERYDDMAAAMK--EVTETGVELSNEERNLLSVAYKNVVGARRSS 323
           D    ++RA  A QA E+ + +   +K  E+     +L      LL V  + +   R  S
Sbjct: 265 DVRSRIERA--ARQAREKNEKLLQNVKTSEIPINAADLEGINPELLPVIEEEIRSFRDQS 322

Query: 324 WRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPK 473
                   +K    +    + KEY  K +++LR+   D+  LL KH I +
Sbjct: 323 ---AMKKREKQRSKDEYASLYKEYTRKEQEKLRKQNDDLQNLLSKHRISR 369


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +3

Query: 447  LLDKHLIPKASNPESKVFYLKMKGDYYR---YLAEVATGETRHSVVED 581
            +++K  IP++   E+K  Y +  GD+     +L E A  E  H V+ D
Sbjct: 1608 MIEKLCIPESWLNEAKALYARYVGDHLNELYFLQEAALYEDAHKVLLD 1655


>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = +3

Query: 345 EQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKM-KGD 521
           E      E+ Q++A+ Y+V  + +LRE  YD LG +    +P A   ++  F+  +  GD
Sbjct: 43  ENPEAAREKFQKLAEAYQVLSDPKLRE-KYDKLGKVG--AVPDAGFEDAFEFFKNLFGGD 99

Query: 522 YYR-YLAEV 545
            +R Y+ E+
Sbjct: 100 SFRDYVGEL 108


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 282 SVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKE 416
           S +Y  + G   S W+ I  ++ K+ G +R    ++ Y    +KE
Sbjct: 61  SFSYPFLKGKSDSPWQAIQLLDFKSSGQQRAAYYSERYHSFRDKE 105


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 49  EKLILCLNLLVQIHFSPSDKGISELVLFHRPRCPSTRKNWCNVPNW 186
           EKL+ C       HF    +G+ +  L    RC +T    CNVP W
Sbjct: 683 EKLVACTT-----HFY---EGVRKSALSSLWRCATTYYKVCNVPQW 720


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
 Frame = +3

Query: 156 KEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVG-ARRSSWRV 332
           KE L    +L E +    D + A +      V       NLL + YKNV   A  +    
Sbjct: 608 KEHLYSFLQLVEPSFAKSDSSNATESQISESVRKGISIFNLLFIVYKNVCSQAGINPSTK 667

Query: 333 ISSIEQKTEGSE------RKQQMAKEYRVKVEKELREICYDVLGLLDKHLI 467
           +  +++ T   E      +  Q  +EY+ K E ELR     +  LL+  LI
Sbjct: 668 LEDLDEHTLSDELTYITKKFVQKDQEYQTK-EIELRNYKITLQSLLEDKLI 717


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 91  FSPSDK-GISELVLFHRPRCPSTRKNWCNVPNWPNKLSDMTT 213
           FSP +K  + +L LFH  + PS+++    V N  +  SD +T
Sbjct: 162 FSPPEKPSMKDLALFHGNKSPSSKETIPKVSN--SNSSDTST 201


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +3

Query: 366 ERKQQMAKEYRVKVEKELREICYDV--LGLLDKHLIPKASNPE 488
           E++Q  A +YR+KVE+   +I   V  +  L+  L  + SNPE
Sbjct: 85  EQEQNEANDYRLKVERLEHKISDYVQEINSLNSQLQIQKSNPE 127


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 5/117 (4%)
 Frame = +3

Query: 237 TETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKE 416
           T +G+  + +E + L V Y  ++       + I  +      S   +   +   ++   E
Sbjct: 278 TNSGLYSTKKELSALQVRYATLLRKFTDQTKKIEELSLAASRSSENENTIRRLALE-NHE 336

Query: 417 LREICYDVLGLLD-----KHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSV 572
           L+     +   +D     KHLI  ++NP+   F      D   Y  EV    T+ SV
Sbjct: 337 LKNSNNQLNNHIDDLTREKHLIALSNNPKGDEFLSPSNLDEMVYSKEVGLSFTQPSV 393


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,218
Number of Sequences: 5004
Number of extensions: 45966
Number of successful extensions: 169
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)