Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l17r
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0593 + 4408229-4408294,4408764-4409096,4409756-4409794,440...    29   5.4  

>02_01_0593 +
           4408229-4408294,4408764-4409096,4409756-4409794,
           4409870-4409937,4410024-4410068,4410478-4410655,
           4410740-4410871,4410941-4411009,4411258-4411305,
           4411498-4411545,4411654-4411763,4412044-4412125,
           4412232-4412345
          Length = 443

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 620 QGF*YFYIYC-IDYMYQLNFSRLNICISIFLCPYTV 516
           QGF Y ++ C + Y Y  N S   I +  F C YT+
Sbjct: 42  QGFRYLFLVCYVFYNYSKNGSATYITVPGFFCLYTM 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,573,312
Number of Sequences: 37544
Number of extensions: 229979
Number of successful extensions: 386
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)