BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10l17r (766 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AK124803-1|BAC85953.1| 180|Homo sapiens protein ( Homo sapiens ... 32 2.6 >AK124803-1|BAC85953.1| 180|Homo sapiens protein ( Homo sapiens cDNA FLJ42813 fis, clone BRCAN2012355. ). Length = 180 Score = 31.9 bits (69), Expect = 2.6 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = -3 Query: 653 ICLRK*YPINTQGF*YFYIYCIDYMYQLNFSRLNICISIFLCPYT 519 +C RK + + Y YIY Y Y ++IC+ I+LC YT Sbjct: 41 MCTRKHMYTHKHMYVYTYIYVYTYTYVC--VHIHICVHIYLCMYT 83 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 84,254,155 Number of Sequences: 237096 Number of extensions: 1350665 Number of successful extensions: 5596 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 5501 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5595 length of database: 76,859,062 effective HSP length: 89 effective length of database: 55,757,518 effective search space used: 9199990470 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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