BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10l17r (766 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U88179-4|AAU05547.1| 576|Caenorhabditis elegans Hypothetical pr... 30 2.1 U88179-3|AAX88809.1| 751|Caenorhabditis elegans Hypothetical pr... 30 2.1 U88179-2|AAU05546.1| 770|Caenorhabditis elegans Hypothetical pr... 30 2.1 >U88179-4|AAU05547.1| 576|Caenorhabditis elegans Hypothetical protein R57.1b protein. Length = 576 Score = 29.9 bits (64), Expect = 2.1 Identities = 10/19 (52%), Positives = 15/19 (78%) Frame = +3 Query: 576 VHVIDTINIKVLKALGVYW 632 +H++DT N+ V KA+G YW Sbjct: 553 IHLLDTDNLSVHKAIGQYW 571 >U88179-3|AAX88809.1| 751|Caenorhabditis elegans Hypothetical protein R57.1c protein. Length = 751 Score = 29.9 bits (64), Expect = 2.1 Identities = 10/19 (52%), Positives = 15/19 (78%) Frame = +3 Query: 576 VHVIDTINIKVLKALGVYW 632 +H++DT N+ V KA+G YW Sbjct: 553 IHLLDTDNLSVHKAIGQYW 571 >U88179-2|AAU05546.1| 770|Caenorhabditis elegans Hypothetical protein R57.1a protein. Length = 770 Score = 29.9 bits (64), Expect = 2.1 Identities = 10/19 (52%), Positives = 15/19 (78%) Frame = +3 Query: 576 VHVIDTINIKVLKALGVYW 632 +H++DT N+ V KA+G YW Sbjct: 572 IHLLDTDNLSVHKAIGQYW 590 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,994,595 Number of Sequences: 27780 Number of extensions: 248760 Number of successful extensions: 514 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 508 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 514 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1830096852 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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