Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l17r
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88179-4|AAU05547.1|  576|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U88179-3|AAX88809.1|  751|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U88179-2|AAU05546.1|  770|Caenorhabditis elegans Hypothetical pr...    30   2.1  

>U88179-4|AAU05547.1|  576|Caenorhabditis elegans Hypothetical
           protein R57.1b protein.
          Length = 576

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 576 VHVIDTINIKVLKALGVYW 632
           +H++DT N+ V KA+G YW
Sbjct: 553 IHLLDTDNLSVHKAIGQYW 571


>U88179-3|AAX88809.1|  751|Caenorhabditis elegans Hypothetical
           protein R57.1c protein.
          Length = 751

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 576 VHVIDTINIKVLKALGVYW 632
           +H++DT N+ V KA+G YW
Sbjct: 553 IHLLDTDNLSVHKAIGQYW 571


>U88179-2|AAU05546.1|  770|Caenorhabditis elegans Hypothetical
           protein R57.1a protein.
          Length = 770

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 576 VHVIDTINIKVLKALGVYW 632
           +H++DT N+ V KA+G YW
Sbjct: 572 IHLLDTDNLSVHKAIGQYW 590


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,994,595
Number of Sequences: 27780
Number of extensions: 248760
Number of successful extensions: 514
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)