Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l17f
         (658 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    25   0.41 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    25   0.55 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           24   1.3  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   2.9  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   3.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   3.9  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   3.9  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   8.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.9  

>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 430 VLVPADIQGVPERLLVQFHGLLLHIPVPDHNNCG 531
           +  P DI+ + +  LV+   LLL +  P H N G
Sbjct: 281 IYTPQDIRDLLQYSLVRGVRLLLEVDAPSHVNAG 314


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 25.0 bits (52), Expect = 0.55
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 176 PPTPRGVPLPAAPTPRPSVLAPLA-ASAVRQQTFLTI 69
           PP P+  PLP  P   P+++ P A   +  Q  F+ +
Sbjct: 175 PPLPQVPPLPLPPIFPPTMINPSAICESAAQLIFMNV 211



 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 185 NNWPPLPGFCPI 220
           NN+PPLP   P+
Sbjct: 172 NNYPPLPQVPPL 183


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 167 PRGVPLPAAPTPRPSVLAPLAASAVRQQT 81
           PR VP  AAP+   +V  P A   VR  T
Sbjct: 30  PRNVPNFAAPSTSTAVQRPQAILQVRPST 58


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -3

Query: 173 PTPRGVPLPAAPTPRPSVLAPLA-ASAVRQQTFLTI 69
           P P+  PLP  P   P+++ P A   +  Q  F+ +
Sbjct: 176 PLPQVPPLPLPPIFAPTMINPSAICESAAQLLFMNV 211


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 199 PPGLLSHTAVLLPG 240
           PP L SH A++ PG
Sbjct: 240 PPHLSSHPAIVTPG 253


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 199 PPGLLSHTAVLLPG 240
           PP L SH A++ PG
Sbjct: 132 PPHLSSHPAIVTPG 145


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 378 VVKPPPENSMDIPPTMFRA 322
           VV+P PE SM I P ++ +
Sbjct: 329 VVRPFPERSMGITPMIWNS 347


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 170 TPRGVPLPAAPTPRPSV 120
           TP G+P P+     P+V
Sbjct: 220 TPTGIPTPSTSASPPTV 236


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 173 PTPRGVPLPAAP 138
           PTP  VP P++P
Sbjct: 55  PTPGDVPTPSSP 66


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,271
Number of Sequences: 336
Number of extensions: 3378
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)