Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10l17f
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 28 1.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.4
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 27 2.4
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 27 2.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.1
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 4.2
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo... 26 5.5
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 5.5
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 7.3
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch... 25 9.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 9.6
SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb... 25 9.6
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/61 (27%), Positives = 24/61 (39%)
Frame = +1
Query: 244 QRRHTTRVPEDRPSSIPFVDVLRARLSSEHSRRDVHTVLGRWLHDLRPLHTVFRPVHAVQ 423
Q + E + S P A L E HT+L H+L L V + +HAV
Sbjct: 401 QNKERVTALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRDHELERLEKVLKDIHAVY 460
Query: 424 F 426
+
Sbjct: 461 Y 461
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -3
Query: 176 PPTPRGVPLPAAPTPRPSVLAP 111
PP P VP A P P+PSV AP
Sbjct: 1131 PPVP--VPSGAPPVPKPSVAAP 1150
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 182 GDPPTPRGVPLPAAPTPRPSVLAP 111
G PP P +P P P+PSV AP
Sbjct: 1081 GAPPVPAPSGIP--PVPKPSVAAP 1102
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 176 PPTPRGVPLPAAPTPRPSVLAP 111
PP P P A P P+PSV AP
Sbjct: 1112 PPVP--APSGAPPVPKPSVAAP 1131
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 176 PPTPRGVPLPAAPTPRPSVLAP 111
PP P P A P P+PSV AP
Sbjct: 1150 PPVP--APSGAPPVPKPSVAAP 1169
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -3
Query: 242 YPGRSTAVWDRSPGGAASYCGDPPTPRGVP 153
Y G T D + G G PP PRGVP
Sbjct: 470 YEGERTLTKDNNLLGKFDLRGIPPAPRGVP 499
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 392 WRGRRS*SHLPRTVWTSLRLCSELRRARRTSTNGIDDGR 276
WR R + SH T SLR E +A ++T + D R
Sbjct: 1080 WRNRENLSHNNNTTRASLRELLEQEKADASTTTVLSDSR 1118
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -3
Query: 176 PPTPRG-VPLPAAPTPRPSVLAPLAASA 96
PPTP+ + P + PRPS+ P ASA
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASA 157
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -3
Query: 206 PGGAASYCGDPPTPRGVPLPAAPTPRPSVLAPLAASAV 93
P GA + G+P P VPL T P P A +V
Sbjct: 1910 PAGATAISGNPGMPAPVPLTGKETAVPLSSMPNAPPSV 1947
>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = -2
Query: 522 IMIWNRNMKKKTMKLNEESLRNALYIGR-YQHTKLNGVNRTKYSMERPKVVKPPPENSMD 346
I + +N+ +T+ ++ +A I R ++T ++GV + S+ P++ PP M
Sbjct: 195 IQMLRKNLPSETVLFANGNILHAQDIDRCIKYTGVDGVLSAEGSLYNPRIFLPPSSPLMT 254
Query: 345 IPP 337
+ P
Sbjct: 255 LYP 257
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.8 bits (54), Expect = 5.5
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 203 PGFCPIQPCFYQDINVDIPLE 265
PG I PCF + + +D+P++
Sbjct: 230 PGVQAIIPCFLKMVQIDVPID 250
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.4 bits (53), Expect = 7.3
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -3
Query: 227 TAVWDRSPGGAASYCGDPPTPRGVPLPAAPTPRPSVLAPLAASAVRQQ-TFLTIT 66
TA+ + + G AA Y G PP+ P P +V++ A A+ QQ T L+ T
Sbjct: 91 TAIPNPANGYAAVY-GGPPSQLPPPPQPQSHPNVTVISASPARAIEQQPTILSST 144
>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 794
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 420 NGVNRTKYSMERPKVVKPPPENSMDIPPTMFRAKTSA 310
N + + SME ++++PP E+S P + R K +A
Sbjct: 34 NDGEQNETSMEEMEIIEPPSEDSSRFP--LLRTKLAA 68
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 176 PPTPRGVPLPAAPTPRPSVLAPLAASA 96
PP P P+PA P P PL AS+
Sbjct: 1715 PPPPSAPPMPAGPPSAPP--PPLPASS 1739
>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 436
Score = 25.0 bits (52), Expect = 9.6
Identities = 9/44 (20%), Positives = 21/44 (47%)
Frame = -2
Query: 516 IWNRNMKKKTMKLNEESLRNALYIGRYQHTKLNGVNRTKYSMER 385
+WN N+K + ++ + + + R+Q K+ N +S +
Sbjct: 392 LWNNNVKLVSDRIRANVASHGVQVWRFQQYKVKNTNDKFFSFNK 435
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,072
Number of Sequences: 5004
Number of extensions: 49303
Number of successful extensions: 206
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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