BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10l17f (658 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 28 1.4 SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.4 SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 27 2.4 SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 27 2.4 SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.1 SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 4.2 SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo... 26 5.5 SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 5.5 SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 7.3 SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch... 25 9.6 SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 9.6 SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb... 25 9.6 >SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 723 Score = 27.9 bits (59), Expect = 1.4 Identities = 17/61 (27%), Positives = 24/61 (39%) Frame = +1 Query: 244 QRRHTTRVPEDRPSSIPFVDVLRARLSSEHSRRDVHTVLGRWLHDLRPLHTVFRPVHAVQ 423 Q + E + S P A L E HT+L H+L L V + +HAV Sbjct: 401 QNKERVTALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRDHELERLEKVLKDIHAVY 460 Query: 424 F 426 + Sbjct: 461 Y 461 >SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 1611 Score = 27.9 bits (59), Expect = 1.4 Identities = 13/22 (59%), Positives = 14/22 (63%) Frame = -3 Query: 176 PPTPRGVPLPAAPTPRPSVLAP 111 PP P VP A P P+PSV AP Sbjct: 1131 PPVP--VPSGAPPVPKPSVAAP 1150 Score = 26.2 bits (55), Expect = 4.2 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -3 Query: 182 GDPPTPRGVPLPAAPTPRPSVLAP 111 G PP P +P P P+PSV AP Sbjct: 1081 GAPPVPAPSGIP--PVPKPSVAAP 1102 Score = 26.2 bits (55), Expect = 4.2 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = -3 Query: 176 PPTPRGVPLPAAPTPRPSVLAP 111 PP P P A P P+PSV AP Sbjct: 1112 PPVP--APSGAPPVPKPSVAAP 1131 Score = 26.2 bits (55), Expect = 4.2 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = -3 Query: 176 PPTPRGVPLPAAPTPRPSVLAP 111 PP P P A P P+PSV AP Sbjct: 1150 PPVP--APSGAPPVPKPSVAAP 1169 >SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||Manual Length = 663 Score = 27.1 bits (57), Expect = 2.4 Identities = 13/30 (43%), Positives = 14/30 (46%) Frame = -3 Query: 242 YPGRSTAVWDRSPGGAASYCGDPPTPRGVP 153 Y G T D + G G PP PRGVP Sbjct: 470 YEGERTLTKDNNLLGKFDLRGIPPAPRGVP 499 >SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces pombe|chr 3|||Manual Length = 1347 Score = 27.1 bits (57), Expect = 2.4 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = -3 Query: 392 WRGRRS*SHLPRTVWTSLRLCSELRRARRTSTNGIDDGR 276 WR R + SH T SLR E +A ++T + D R Sbjct: 1080 WRNRENLSHNNNTTRASLRELLEQEKADASTTTVLSDSR 1118 >SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual Length = 309 Score = 26.6 bits (56), Expect = 3.1 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%) Frame = -3 Query: 176 PPTPRG-VPLPAAPTPRPSVLAPLAASA 96 PPTP+ + P + PRPS+ P ASA Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASA 157 >SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Schizosaccharomyces pombe|chr 1|||Manual Length = 1995 Score = 26.2 bits (55), Expect = 4.2 Identities = 14/38 (36%), Positives = 17/38 (44%) Frame = -3 Query: 206 PGGAASYCGDPPTPRGVPLPAAPTPRPSVLAPLAASAV 93 P GA + G+P P VPL T P P A +V Sbjct: 1910 PAGATAISGNPGMPAPVPLTGKETAVPLSSMPNAPPSV 1947 >SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 399 Score = 25.8 bits (54), Expect = 5.5 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = -2 Query: 522 IMIWNRNMKKKTMKLNEESLRNALYIGR-YQHTKLNGVNRTKYSMERPKVVKPPPENSMD 346 I + +N+ +T+ ++ +A I R ++T ++GV + S+ P++ PP M Sbjct: 195 IQMLRKNLPSETVLFANGNILHAQDIDRCIKYTGVDGVLSAEGSLYNPRIFLPPSSPLMT 254 Query: 345 IPP 337 + P Sbjct: 255 LYP 257 >SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 3655 Score = 25.8 bits (54), Expect = 5.5 Identities = 8/21 (38%), Positives = 14/21 (66%) Frame = +2 Query: 203 PGFCPIQPCFYQDINVDIPLE 265 PG I PCF + + +D+P++ Sbjct: 230 PGVQAIIPCFLKMVQIDVPID 250 >SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1522 Score = 25.4 bits (53), Expect = 7.3 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Frame = -3 Query: 227 TAVWDRSPGGAASYCGDPPTPRGVPLPAAPTPRPSVLAPLAASAVRQQ-TFLTIT 66 TA+ + + G AA Y G PP+ P P +V++ A A+ QQ T L+ T Sbjct: 91 TAIPNPANGYAAVY-GGPPSQLPPPPQPQSHPNVTVISASPARAIEQQPTILSST 144 >SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 794 Score = 25.0 bits (52), Expect = 9.6 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = -2 Query: 420 NGVNRTKYSMERPKVVKPPPENSMDIPPTMFRAKTSA 310 N + + SME ++++PP E+S P + R K +A Sbjct: 34 NDGEQNETSMEEMEIIEPPSEDSSRFP--LLRTKLAA 68 >SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF hand and WH2 motif |Schizosaccharomyces pombe|chr 1|||Manual Length = 1794 Score = 25.0 bits (52), Expect = 9.6 Identities = 12/27 (44%), Positives = 14/27 (51%) Frame = -3 Query: 176 PPTPRGVPLPAAPTPRPSVLAPLAASA 96 PP P P+PA P P PL AS+ Sbjct: 1715 PPPPSAPPMPAGPPSAPP--PPLPASS 1739 >SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pombe|chr 1|||Manual Length = 436 Score = 25.0 bits (52), Expect = 9.6 Identities = 9/44 (20%), Positives = 21/44 (47%) Frame = -2 Query: 516 IWNRNMKKKTMKLNEESLRNALYIGRYQHTKLNGVNRTKYSMER 385 +WN N+K + ++ + + + R+Q K+ N +S + Sbjct: 392 LWNNNVKLVSDRIRANVASHGVQVWRFQQYKVKNTNDKFFSFNK 435 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,421,072 Number of Sequences: 5004 Number of extensions: 49303 Number of successful extensions: 206 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 179 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 204 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 297805304 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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