BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10l17f (658 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_22524| Best HMM Match : No HMM Matches (HMM E-Value=.) 108 3e-24 SB_13427| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 5e-09 SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.83 SB_31852| Best HMM Match : TSP_1 (HMM E-Value=4.2e-14) 30 1.4 SB_27853| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4 SB_20177| Best HMM Match : hATC (HMM E-Value=1e-04) 30 1.4 SB_1097| Best HMM Match : Rho_N (HMM E-Value=0.0007) 29 2.5 SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2) 29 2.5 SB_58912| Best HMM Match : rve (HMM E-Value=2.2e-17) 29 3.3 SB_56113| Best HMM Match : zf-CCHC (HMM E-Value=0.0026) 29 3.3 SB_55168| Best HMM Match : rve (HMM E-Value=2.2e-17) 29 3.3 SB_44164| Best HMM Match : rve (HMM E-Value=2.2e-17) 29 3.3 SB_31873| Best HMM Match : rve (HMM E-Value=0.00063) 29 3.3 SB_28953| Best HMM Match : rve (HMM E-Value=8.9e-07) 29 3.3 SB_27406| Best HMM Match : rve (HMM E-Value=4e-17) 29 3.3 SB_24087| Best HMM Match : rve (HMM E-Value=2.2e-17) 29 3.3 SB_22996| Best HMM Match : Me-amine-dh_L (HMM E-Value=7.2) 29 3.3 SB_22164| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3 SB_20221| Best HMM Match : RVT_1 (HMM E-Value=0.00045) 29 3.3 SB_12746| Best HMM Match : DUF1379 (HMM E-Value=5.5) 29 3.3 SB_2133| Best HMM Match : rve (HMM E-Value=2.2e-17) 29 3.3 SB_1563| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3 SB_36452| Best HMM Match : Collagen (HMM E-Value=0.35) 29 3.3 SB_32624| Best HMM Match : rve (HMM E-Value=0.00042) 29 3.3 SB_23879| Best HMM Match : rve (HMM E-Value=2.2e-17) 29 3.3 SB_23421| Best HMM Match : rve (HMM E-Value=1.8e-18) 29 3.3 SB_21919| Best HMM Match : rve (HMM E-Value=1.3e-16) 29 3.3 SB_21695| Best HMM Match : RVT_1 (HMM E-Value=0.00068) 29 3.3 SB_56047| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4 SB_41466| Best HMM Match : Collagen (HMM E-Value=9.2) 29 4.4 SB_21520| Best HMM Match : Trypsin (HMM E-Value=0) 29 4.4 SB_15824| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8 SB_55600| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8 SB_46327| Best HMM Match : Rho_N (HMM E-Value=4.2e-05) 28 5.8 SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7 SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7 SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 28 7.7 SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7 SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09) 28 7.7 SB_15859| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7 SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092) 28 7.7 >SB_22524| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 353 Score = 108 bits (260), Expect = 3e-24 Identities = 55/156 (35%), Positives = 76/156 (48%), Gaps = 6/156 (3%) Frame = +2 Query: 170 SAGRHNNWPPLPGFCPIQPCFYQDINVDIPLEFQRIVRHLYHLWMFYALVLALNIVGGMX 349 S R NN+PPLP + +PCFY DI VDIP+E+Q++ R L+ W Y+ V+ N + + Sbjct: 132 SGYRENNFPPLPKWFKCKPCFYHDIQVDIPIEYQKLCRFLFIRWQAYSFVMFYNFIVALA 191 Query: 350 XXXXXXX-----XXXXXXXXXYFVLFTPFSFVCWYRPIYKAFRSDSSXXXXXXXXXXXXX 514 Y V P SF+CWYRP YKA ++DSS Sbjct: 192 LLSTSATGNHNEGKTFGLSILYLVWNVPASFLCWYRPAYKALKNDSSFSYIIFFLIFFLH 251 Query: 515 XXXTVVQSIGFSDGGSCGLITSISQFK-TNIAVGII 619 + ++G GGSCG IT+ + TN AV I+ Sbjct: 252 ISINIYYTLGMPGGGSCGFITATDTWHGTNKAVSIM 287 >SB_13427| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 45 Score = 58.4 bits (135), Expect = 5e-09 Identities = 22/41 (53%), Positives = 30/41 (73%) Frame = +2 Query: 179 RHNNWPPLPGFCPIQPCFYQDINVDIPLEFQRIVRHLYHLW 301 R NN+PPLP + +PCFY DI VDIP+E+Q++ R L+ W Sbjct: 3 RENNFPPLPEWFKFKPCFYHDIQVDIPIEYQKLCRFLFIRW 43 >SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1870 Score = 31.1 bits (67), Expect = 0.83 Identities = 28/79 (35%), Positives = 32/79 (40%), Gaps = 11/79 (13%) Frame = -3 Query: 218 WDRSPGGAASYCGDPPTPRGVPLPAAP---TPRPSVLAPLAASAVRQQ--------TFLT 72 W+ S A G P TP P P TP+PS APL AS R Q LT Sbjct: 1635 WESSICLRAEIYGCPVTPPTTDPPRPPVTVTPKPSTDAPLPASTSRPQPPVPTKLPVVLT 1694 Query: 71 ITLHYRNNKNTDRRAKCTS 15 I + TD+ A C S Sbjct: 1695 IPPRPIGLRCTDKHASCPS 1713 Score = 28.3 bits (60), Expect = 5.8 Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 3/21 (14%) Frame = -3 Query: 176 PPTPRG---VPLPAAPTPRPS 123 PPTPR P P PTPRPS Sbjct: 1368 PPTPRPRPPTPRPGPPTPRPS 1388 >SB_31852| Best HMM Match : TSP_1 (HMM E-Value=4.2e-14) Length = 162 Score = 30.3 bits (65), Expect = 1.4 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Frame = -2 Query: 510 NRNMKKKTMKLNEESLRNALYIGRYQHTKLNGVNRTKYSMERPKVV-KPPPENSMDI 343 N +K+ KLN++ + A+ Q K+ G +R KY E +V +PPPE+ +++ Sbjct: 28 NDLLKEPAQKLNQDGI--AVLAAGVQE-KIEGDDRNKYKKEMDTLVSEPPPEHIVEV 81 >SB_27853| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 642 Score = 30.3 bits (65), Expect = 1.4 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -3 Query: 176 PPTPRGVPLPAAPTPRPSVLAPLAAS 99 PP+P VP P AP RP P + S Sbjct: 204 PPSPEPVPTPKAPASRPGTKRPASPS 229 >SB_20177| Best HMM Match : hATC (HMM E-Value=1e-04) Length = 618 Score = 30.3 bits (65), Expect = 1.4 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -3 Query: 176 PPTPRGVPLPAAPTPRPSVLAPLAAS 99 PP+P VP P AP RP P + S Sbjct: 28 PPSPEPVPTPKAPASRPGTKRPASPS 53 >SB_1097| Best HMM Match : Rho_N (HMM E-Value=0.0007) Length = 211 Score = 29.5 bits (63), Expect = 2.5 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%) Frame = -3 Query: 200 GAASYCGDPPTPRGVPLP--AAPTPRPSVLAP 111 GA + PP PR VPLP PRPS + P Sbjct: 37 GALTSTSPPPPPRRVPLPKLVKGLPRPSRITP 68 >SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2) Length = 238 Score = 29.5 bits (63), Expect = 2.5 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = +1 Query: 574 HKYQSVQN*HSRWHHHADGDXRLHH 648 HK+Q + H +HHH D D HH Sbjct: 96 HKWQHYHH-HHHYHHHLDYDHHYHH 119 >SB_58912| Best HMM Match : rve (HMM E-Value=2.2e-17) Length = 511 Score = 29.1 bits (62), Expect = 3.3 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +3 Query: 339 EGCPYCSREVASRPSASPY 395 E C YC+R S+PSA PY Sbjct: 109 ERCSYCNRITPSQPSAPPY 127 >SB_56113| Best HMM Match : zf-CCHC (HMM E-Value=0.0026) Length = 1163 Score = 29.1 bits (62), Expect = 3.3 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +3 Query: 339 EGCPYCSREVASRPSASPY 395 E C YC+R S+PSA PY Sbjct: 928 ERCSYCNRITPSQPSAPPY 946 >SB_55168| Best HMM Match : rve (HMM E-Value=2.2e-17) Length = 1017 Score = 29.1 bits (62), Expect = 3.3 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +3 Query: 339 EGCPYCSREVASRPSASPY 395 E C YC+R S+PSA PY Sbjct: 615 ERCSYCNRITPSQPSAPPY 633 >SB_44164| Best HMM Match : rve (HMM E-Value=2.2e-17) Length = 292 Score = 29.1 bits (62), Expect = 3.3 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +3 Query: 339 EGCPYCSREVASRPSASPY 395 E C YC+R S+PSA PY Sbjct: 79 ERCSYCNRITPSQPSAPPY 97 >SB_31873| Best HMM Match : rve (HMM E-Value=0.00063) Length = 302 Score = 29.1 bits (62), Expect = 3.3 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +3 Query: 339 EGCPYCSREVASRPSASPY 395 E C YC+R S+PSA PY Sbjct: 163 ERCSYCNRITPSQPSAPPY 181 >SB_28953| Best HMM Match : rve (HMM E-Value=8.9e-07) Length = 555 Score = 29.1 bits (62), Expect = 3.3 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +3 Query: 339 EGCPYCSREVASRPSASPY 395 E C YC+R S+PSA PY Sbjct: 163 ERCSYCNRITPSQPSAPPY 181 >SB_27406| Best HMM Match : rve (HMM E-Value=4e-17) Length = 315 Score = 29.1 bits (62), Expect = 3.3 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +3 Query: 339 EGCPYCSREVASRPSASPY 395 E C YC+R S+PSA PY Sbjct: 23 ERCSYCNRITPSQPSAPPY 41 >SB_24087| Best HMM Match : rve (HMM E-Value=2.2e-17) Length = 1229 Score = 29.1 bits (62), Expect = 3.3 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +3 Query: 339 EGCPYCSREVASRPSASPY 395 E C YC+R S+PSA PY Sbjct: 862 ERCSYCNRITPSQPSAPPY 880 >SB_22996| Best HMM Match : Me-amine-dh_L (HMM E-Value=7.2) Length = 250 Score = 29.1 bits (62), Expect = 3.3 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +3 Query: 339 EGCPYCSREVASRPSASPY 395 E C YC+R S+PSA PY Sbjct: 149 ERCSYCNRITPSQPSAPPY 167 >SB_22164| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 142 Score = 29.1 bits (62), Expect = 3.3 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = -3 Query: 212 RSPGGAASYCGDPP-TPRGVPLPAAPTPRPSVLAPLAASAVRQQ 84 RSP G AS + +P G P A +P PSV +P S+V Q Sbjct: 18 RSPTGTASPSENGSGSPEGSRSPEASSPPPSVQSPDGGSSVASQ 61 >SB_20221| Best HMM Match : RVT_1 (HMM E-Value=0.00045) Length = 955 Score = 29.1 bits (62), Expect = 3.3 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +3 Query: 339 EGCPYCSREVASRPSASPY 395 E C YC+R S+PSA PY Sbjct: 871 ERCSYCNRITPSQPSAPPY 889 >SB_12746| Best HMM Match : DUF1379 (HMM E-Value=5.5) Length = 398 Score = 29.1 bits (62), Expect = 3.3 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +3 Query: 339 EGCPYCSREVASRPSASPY 395 E C YC+R S+PSA PY Sbjct: 355 ERCSYCNRITPSQPSAPPY 373 >SB_2133| Best HMM Match : rve (HMM E-Value=2.2e-17) Length = 425 Score = 29.1 bits (62), Expect = 3.3 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +3 Query: 339 EGCPYCSREVASRPSASPY 395 E C YC+R S+PSA PY Sbjct: 23 ERCSYCNRITPSQPSAPPY 41 >SB_1563| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 762 Score = 29.1 bits (62), Expect = 3.3 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = +2 Query: 188 NWPPLPGFCPIQPCFYQDINVDIPLEFQRIV-RHLYHLWMFYALVLALNIVGG 343 +W P F YQ I IP+E RH Y L++ AL L I+GG Sbjct: 580 SWSTFPVFFGQVTSAYQGIGTLIPIESSMAENRHRYPLYLHLALGLLSAILGG 632 >SB_36452| Best HMM Match : Collagen (HMM E-Value=0.35) Length = 374 Score = 29.1 bits (62), Expect = 3.3 Identities = 13/26 (50%), Positives = 14/26 (53%) Frame = -3 Query: 239 PGRSTAVWDRSPGGAASYCGDPPTPR 162 PGR W PGGAA Y P TP+ Sbjct: 34 PGRVGGEWYDHPGGAAEYVCLPETPQ 59 >SB_32624| Best HMM Match : rve (HMM E-Value=0.00042) Length = 415 Score = 29.1 bits (62), Expect = 3.3 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +3 Query: 339 EGCPYCSREVASRPSASPY 395 E C YC+R S+PSA PY Sbjct: 276 ERCSYCNRITPSQPSAPPY 294 >SB_23879| Best HMM Match : rve (HMM E-Value=2.2e-17) Length = 1273 Score = 29.1 bits (62), Expect = 3.3 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +3 Query: 339 EGCPYCSREVASRPSASPY 395 E C YC+R S+PSA PY Sbjct: 1049 ERCSYCNRITPSQPSAPPY 1067 >SB_23421| Best HMM Match : rve (HMM E-Value=1.8e-18) Length = 838 Score = 29.1 bits (62), Expect = 3.3 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +3 Query: 339 EGCPYCSREVASRPSASPY 395 E C YC+R S+PSA PY Sbjct: 469 ERCSYCNRITPSQPSAPPY 487 >SB_21919| Best HMM Match : rve (HMM E-Value=1.3e-16) Length = 378 Score = 29.1 bits (62), Expect = 3.3 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +3 Query: 339 EGCPYCSREVASRPSASPY 395 E C YC+R S+PSA PY Sbjct: 108 ERCSYCNRITPSQPSAPPY 126 >SB_21695| Best HMM Match : RVT_1 (HMM E-Value=0.00068) Length = 1502 Score = 29.1 bits (62), Expect = 3.3 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +3 Query: 339 EGCPYCSREVASRPSASPY 395 E C YC+R S+PSA PY Sbjct: 1182 ERCSYCNRITPSQPSAPPY 1200 >SB_56047| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 440 Score = 28.7 bits (61), Expect = 4.4 Identities = 11/22 (50%), Positives = 12/22 (54%) Frame = -3 Query: 176 PPTPRGVPLPAAPTPRPSVLAP 111 PP P GVP P P P P + P Sbjct: 306 PPLPAGVPAPPPPPPPPMLGGP 327 >SB_41466| Best HMM Match : Collagen (HMM E-Value=9.2) Length = 288 Score = 28.7 bits (61), Expect = 4.4 Identities = 13/26 (50%), Positives = 14/26 (53%) Frame = -3 Query: 239 PGRSTAVWDRSPGGAASYCGDPPTPR 162 PGR W PGGAA Y P TP+ Sbjct: 86 PGRVGGEWLDHPGGAAEYVCLPETPQ 111 >SB_21520| Best HMM Match : Trypsin (HMM E-Value=0) Length = 800 Score = 28.7 bits (61), Expect = 4.4 Identities = 18/51 (35%), Positives = 25/51 (49%) Frame = -3 Query: 359 RTVWTSLRLCSELRRARRTSTNGIDDGRSSGTRVVCRR*YPGRSTAVWDRS 207 R +W+S SEL AR ++G SG RV+ R Y G + +W S Sbjct: 663 RVIWSSSYRESELFGARVILSSGYQKFELSGVRVIGSRNYRG-ARVIWGSS 712 >SB_15824| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1258 Score = 28.3 bits (60), Expect = 5.8 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 2/36 (5%) Frame = -3 Query: 200 GAASYCGDPPTPRGVPLP--AAPTPRPSVLAPLAAS 99 GA + PP PR VPLP PRP + P AS Sbjct: 87 GALTNTSPPPPPRRVPLPKLLKGLPRPPRIIPSNAS 122 >SB_55600| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 971 Score = 28.3 bits (60), Expect = 5.8 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%) Frame = -3 Query: 200 GAASYCGDPPTPRGVPLP--AAPTPRPSVLAPLAASAV 93 GA + PP PR VPLP PRP + P S + Sbjct: 169 GALTSTSPPPPPRRVPLPKLVKGLPRPPRITPSNTSEI 206 >SB_46327| Best HMM Match : Rho_N (HMM E-Value=4.2e-05) Length = 856 Score = 28.3 bits (60), Expect = 5.8 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 2/36 (5%) Frame = -3 Query: 200 GAASYCGDPPTPRGVPLP--AAPTPRPSVLAPLAAS 99 GA + PP PR VPLP PRP + P AS Sbjct: 87 GALTNTSPPPPPRRVPLPKLLKGLPRPPRIIPSNAS 122 >SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 870 Score = 27.9 bits (59), Expect = 7.7 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 6/42 (14%) Frame = -3 Query: 182 GDPPTPRGVPL------PAAPTPRPSVLAPLAASAVRQQTFL 75 G PP G+P+ P A +PRPS+L + +R+ T + Sbjct: 510 GVPPASSGIPVSISTSNPNATSPRPSILRKRTSEGLRKPTIV 551 >SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 4072 Score = 27.9 bits (59), Expect = 7.7 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 4/44 (9%) Frame = -3 Query: 239 PGRSTAV----WDRSPGGAASYCGDPPTPRGVPLPAAPTPRPSV 120 PGRS + + P G AS PP P+G P P P R V Sbjct: 3800 PGRSKNISGPPGPQGPPGQASQIPGPPGPQGPPGPPGPPGRDVV 3843 >SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) Length = 1080 Score = 27.9 bits (59), Expect = 7.7 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 3/29 (10%) Frame = -3 Query: 176 PPTPRG---VPLPAAPTPRPSVLAPLAAS 99 PP P G VP P P+P PS L+PL+++ Sbjct: 807 PPLPEGLRPVPSPRTPSPMPS-LSPLSST 834 >SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 330 Score = 27.9 bits (59), Expect = 7.7 Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 1/21 (4%) Frame = -3 Query: 185 CGDPPTPRGVPLPA-APTPRP 126 CGDPP P P P PTP P Sbjct: 92 CGDPPPPATPPPPTMPPTPPP 112 >SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09) Length = 2059 Score = 27.9 bits (59), Expect = 7.7 Identities = 14/46 (30%), Positives = 26/46 (56%) Frame = -1 Query: 427 ETERREQDEIQYGEAEGREATSREQYGHPSDYVQS*DERVEHPQMV 290 + ++R+Q E+Q +AE R+ +Q G P Q+ D++ + Q V Sbjct: 1747 QEQQRQQHELQQQQAEQRQRERSQQQGQPRQSQQN-DQQQQQQQGV 1791 >SB_15859| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 970 Score = 27.9 bits (59), Expect = 7.7 Identities = 15/50 (30%), Positives = 22/50 (44%) Frame = +1 Query: 280 PSSIPFVDVLRARLSSEHSRRDVHTVLGRWLHDLRPLHTVFRPVHAVQFR 429 P S P D R ++ SR +H W+ +RPL V P+ + R Sbjct: 764 PPSSPSGDEWRQPFTARRSRPHLHGFKSIWIRWIRPLIRVINPLFYQRLR 813 >SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092) Length = 1146 Score = 27.9 bits (59), Expect = 7.7 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Frame = -3 Query: 239 PGRSTAVWD-RSPGGAASYCGDPPTPRGVPLPAAPTPRPSVLAPLAASAVRQQ 84 P ST + R P GA PP P + PA P ++ L RQQ Sbjct: 957 PDGSTVYYQTRQPAGAPQQTPQPPQPAQIMRPAHPQMISQPVSSLGRLPTRQQ 1009 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,481,546 Number of Sequences: 59808 Number of extensions: 430042 Number of successful extensions: 1918 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 1588 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1880 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1681430875 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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