Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10l17f
(658 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22524| Best HMM Match : No HMM Matches (HMM E-Value=.) 108 3e-24
SB_13427| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 5e-09
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.83
SB_31852| Best HMM Match : TSP_1 (HMM E-Value=4.2e-14) 30 1.4
SB_27853| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_20177| Best HMM Match : hATC (HMM E-Value=1e-04) 30 1.4
SB_1097| Best HMM Match : Rho_N (HMM E-Value=0.0007) 29 2.5
SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2) 29 2.5
SB_58912| Best HMM Match : rve (HMM E-Value=2.2e-17) 29 3.3
SB_56113| Best HMM Match : zf-CCHC (HMM E-Value=0.0026) 29 3.3
SB_55168| Best HMM Match : rve (HMM E-Value=2.2e-17) 29 3.3
SB_44164| Best HMM Match : rve (HMM E-Value=2.2e-17) 29 3.3
SB_31873| Best HMM Match : rve (HMM E-Value=0.00063) 29 3.3
SB_28953| Best HMM Match : rve (HMM E-Value=8.9e-07) 29 3.3
SB_27406| Best HMM Match : rve (HMM E-Value=4e-17) 29 3.3
SB_24087| Best HMM Match : rve (HMM E-Value=2.2e-17) 29 3.3
SB_22996| Best HMM Match : Me-amine-dh_L (HMM E-Value=7.2) 29 3.3
SB_22164| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_20221| Best HMM Match : RVT_1 (HMM E-Value=0.00045) 29 3.3
SB_12746| Best HMM Match : DUF1379 (HMM E-Value=5.5) 29 3.3
SB_2133| Best HMM Match : rve (HMM E-Value=2.2e-17) 29 3.3
SB_1563| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_36452| Best HMM Match : Collagen (HMM E-Value=0.35) 29 3.3
SB_32624| Best HMM Match : rve (HMM E-Value=0.00042) 29 3.3
SB_23879| Best HMM Match : rve (HMM E-Value=2.2e-17) 29 3.3
SB_23421| Best HMM Match : rve (HMM E-Value=1.8e-18) 29 3.3
SB_21919| Best HMM Match : rve (HMM E-Value=1.3e-16) 29 3.3
SB_21695| Best HMM Match : RVT_1 (HMM E-Value=0.00068) 29 3.3
SB_56047| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_41466| Best HMM Match : Collagen (HMM E-Value=9.2) 29 4.4
SB_21520| Best HMM Match : Trypsin (HMM E-Value=0) 29 4.4
SB_15824| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_55600| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_46327| Best HMM Match : Rho_N (HMM E-Value=4.2e-05) 28 5.8
SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 28 7.7
SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09) 28 7.7
SB_15859| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092) 28 7.7
>SB_22524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 353
Score = 108 bits (260), Expect = 3e-24
Identities = 55/156 (35%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Frame = +2
Query: 170 SAGRHNNWPPLPGFCPIQPCFYQDINVDIPLEFQRIVRHLYHLWMFYALVLALNIVGGMX 349
S R NN+PPLP + +PCFY DI VDIP+E+Q++ R L+ W Y+ V+ N + +
Sbjct: 132 SGYRENNFPPLPKWFKCKPCFYHDIQVDIPIEYQKLCRFLFIRWQAYSFVMFYNFIVALA 191
Query: 350 XXXXXXX-----XXXXXXXXXYFVLFTPFSFVCWYRPIYKAFRSDSSXXXXXXXXXXXXX 514
Y V P SF+CWYRP YKA ++DSS
Sbjct: 192 LLSTSATGNHNEGKTFGLSILYLVWNVPASFLCWYRPAYKALKNDSSFSYIIFFLIFFLH 251
Query: 515 XXXTVVQSIGFSDGGSCGLITSISQFK-TNIAVGII 619
+ ++G GGSCG IT+ + TN AV I+
Sbjct: 252 ISINIYYTLGMPGGGSCGFITATDTWHGTNKAVSIM 287
>SB_13427| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 58.4 bits (135), Expect = 5e-09
Identities = 22/41 (53%), Positives = 30/41 (73%)
Frame = +2
Query: 179 RHNNWPPLPGFCPIQPCFYQDINVDIPLEFQRIVRHLYHLW 301
R NN+PPLP + +PCFY DI VDIP+E+Q++ R L+ W
Sbjct: 3 RENNFPPLPEWFKFKPCFYHDIQVDIPIEYQKLCRFLFIRW 43
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 31.1 bits (67), Expect = 0.83
Identities = 28/79 (35%), Positives = 32/79 (40%), Gaps = 11/79 (13%)
Frame = -3
Query: 218 WDRSPGGAASYCGDPPTPRGVPLPAAP---TPRPSVLAPLAASAVRQQ--------TFLT 72
W+ S A G P TP P P TP+PS APL AS R Q LT
Sbjct: 1635 WESSICLRAEIYGCPVTPPTTDPPRPPVTVTPKPSTDAPLPASTSRPQPPVPTKLPVVLT 1694
Query: 71 ITLHYRNNKNTDRRAKCTS 15
I + TD+ A C S
Sbjct: 1695 IPPRPIGLRCTDKHASCPS 1713
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
Frame = -3
Query: 176 PPTPRG---VPLPAAPTPRPS 123
PPTPR P P PTPRPS
Sbjct: 1368 PPTPRPRPPTPRPGPPTPRPS 1388
>SB_31852| Best HMM Match : TSP_1 (HMM E-Value=4.2e-14)
Length = 162
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = -2
Query: 510 NRNMKKKTMKLNEESLRNALYIGRYQHTKLNGVNRTKYSMERPKVV-KPPPENSMDI 343
N +K+ KLN++ + A+ Q K+ G +R KY E +V +PPPE+ +++
Sbjct: 28 NDLLKEPAQKLNQDGI--AVLAAGVQE-KIEGDDRNKYKKEMDTLVSEPPPEHIVEV 81
>SB_27853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 176 PPTPRGVPLPAAPTPRPSVLAPLAAS 99
PP+P VP P AP RP P + S
Sbjct: 204 PPSPEPVPTPKAPASRPGTKRPASPS 229
>SB_20177| Best HMM Match : hATC (HMM E-Value=1e-04)
Length = 618
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 176 PPTPRGVPLPAAPTPRPSVLAPLAAS 99
PP+P VP P AP RP P + S
Sbjct: 28 PPSPEPVPTPKAPASRPGTKRPASPS 53
>SB_1097| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 211
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = -3
Query: 200 GAASYCGDPPTPRGVPLP--AAPTPRPSVLAP 111
GA + PP PR VPLP PRPS + P
Sbjct: 37 GALTSTSPPPPPRRVPLPKLVKGLPRPSRITP 68
>SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2)
Length = 238
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 574 HKYQSVQN*HSRWHHHADGDXRLHH 648
HK+Q + H +HHH D D HH
Sbjct: 96 HKWQHYHH-HHHYHHHLDYDHHYHH 119
>SB_58912| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 511
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 339 EGCPYCSREVASRPSASPY 395
E C YC+R S+PSA PY
Sbjct: 109 ERCSYCNRITPSQPSAPPY 127
>SB_56113| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
Length = 1163
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 339 EGCPYCSREVASRPSASPY 395
E C YC+R S+PSA PY
Sbjct: 928 ERCSYCNRITPSQPSAPPY 946
>SB_55168| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1017
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 339 EGCPYCSREVASRPSASPY 395
E C YC+R S+PSA PY
Sbjct: 615 ERCSYCNRITPSQPSAPPY 633
>SB_44164| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 292
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 339 EGCPYCSREVASRPSASPY 395
E C YC+R S+PSA PY
Sbjct: 79 ERCSYCNRITPSQPSAPPY 97
>SB_31873| Best HMM Match : rve (HMM E-Value=0.00063)
Length = 302
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 339 EGCPYCSREVASRPSASPY 395
E C YC+R S+PSA PY
Sbjct: 163 ERCSYCNRITPSQPSAPPY 181
>SB_28953| Best HMM Match : rve (HMM E-Value=8.9e-07)
Length = 555
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 339 EGCPYCSREVASRPSASPY 395
E C YC+R S+PSA PY
Sbjct: 163 ERCSYCNRITPSQPSAPPY 181
>SB_27406| Best HMM Match : rve (HMM E-Value=4e-17)
Length = 315
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 339 EGCPYCSREVASRPSASPY 395
E C YC+R S+PSA PY
Sbjct: 23 ERCSYCNRITPSQPSAPPY 41
>SB_24087| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1229
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 339 EGCPYCSREVASRPSASPY 395
E C YC+R S+PSA PY
Sbjct: 862 ERCSYCNRITPSQPSAPPY 880
>SB_22996| Best HMM Match : Me-amine-dh_L (HMM E-Value=7.2)
Length = 250
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 339 EGCPYCSREVASRPSASPY 395
E C YC+R S+PSA PY
Sbjct: 149 ERCSYCNRITPSQPSAPPY 167
>SB_22164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -3
Query: 212 RSPGGAASYCGDPP-TPRGVPLPAAPTPRPSVLAPLAASAVRQQ 84
RSP G AS + +P G P A +P PSV +P S+V Q
Sbjct: 18 RSPTGTASPSENGSGSPEGSRSPEASSPPPSVQSPDGGSSVASQ 61
>SB_20221| Best HMM Match : RVT_1 (HMM E-Value=0.00045)
Length = 955
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 339 EGCPYCSREVASRPSASPY 395
E C YC+R S+PSA PY
Sbjct: 871 ERCSYCNRITPSQPSAPPY 889
>SB_12746| Best HMM Match : DUF1379 (HMM E-Value=5.5)
Length = 398
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 339 EGCPYCSREVASRPSASPY 395
E C YC+R S+PSA PY
Sbjct: 355 ERCSYCNRITPSQPSAPPY 373
>SB_2133| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 425
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 339 EGCPYCSREVASRPSASPY 395
E C YC+R S+PSA PY
Sbjct: 23 ERCSYCNRITPSQPSAPPY 41
>SB_1563| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 188 NWPPLPGFCPIQPCFYQDINVDIPLEFQRIV-RHLYHLWMFYALVLALNIVGG 343
+W P F YQ I IP+E RH Y L++ AL L I+GG
Sbjct: 580 SWSTFPVFFGQVTSAYQGIGTLIPIESSMAENRHRYPLYLHLALGLLSAILGG 632
>SB_36452| Best HMM Match : Collagen (HMM E-Value=0.35)
Length = 374
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -3
Query: 239 PGRSTAVWDRSPGGAASYCGDPPTPR 162
PGR W PGGAA Y P TP+
Sbjct: 34 PGRVGGEWYDHPGGAAEYVCLPETPQ 59
>SB_32624| Best HMM Match : rve (HMM E-Value=0.00042)
Length = 415
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 339 EGCPYCSREVASRPSASPY 395
E C YC+R S+PSA PY
Sbjct: 276 ERCSYCNRITPSQPSAPPY 294
>SB_23879| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1273
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 339 EGCPYCSREVASRPSASPY 395
E C YC+R S+PSA PY
Sbjct: 1049 ERCSYCNRITPSQPSAPPY 1067
>SB_23421| Best HMM Match : rve (HMM E-Value=1.8e-18)
Length = 838
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 339 EGCPYCSREVASRPSASPY 395
E C YC+R S+PSA PY
Sbjct: 469 ERCSYCNRITPSQPSAPPY 487
>SB_21919| Best HMM Match : rve (HMM E-Value=1.3e-16)
Length = 378
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 339 EGCPYCSREVASRPSASPY 395
E C YC+R S+PSA PY
Sbjct: 108 ERCSYCNRITPSQPSAPPY 126
>SB_21695| Best HMM Match : RVT_1 (HMM E-Value=0.00068)
Length = 1502
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 339 EGCPYCSREVASRPSASPY 395
E C YC+R S+PSA PY
Sbjct: 1182 ERCSYCNRITPSQPSAPPY 1200
>SB_56047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3
Query: 176 PPTPRGVPLPAAPTPRPSVLAP 111
PP P GVP P P P P + P
Sbjct: 306 PPLPAGVPAPPPPPPPPMLGGP 327
>SB_41466| Best HMM Match : Collagen (HMM E-Value=9.2)
Length = 288
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -3
Query: 239 PGRSTAVWDRSPGGAASYCGDPPTPR 162
PGR W PGGAA Y P TP+
Sbjct: 86 PGRVGGEWLDHPGGAAEYVCLPETPQ 111
>SB_21520| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 800
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = -3
Query: 359 RTVWTSLRLCSELRRARRTSTNGIDDGRSSGTRVVCRR*YPGRSTAVWDRS 207
R +W+S SEL AR ++G SG RV+ R Y G + +W S
Sbjct: 663 RVIWSSSYRESELFGARVILSSGYQKFELSGVRVIGSRNYRG-ARVIWGSS 712
>SB_15824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1258
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -3
Query: 200 GAASYCGDPPTPRGVPLP--AAPTPRPSVLAPLAAS 99
GA + PP PR VPLP PRP + P AS
Sbjct: 87 GALTNTSPPPPPRRVPLPKLLKGLPRPPRIIPSNAS 122
>SB_55600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 971
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = -3
Query: 200 GAASYCGDPPTPRGVPLP--AAPTPRPSVLAPLAASAV 93
GA + PP PR VPLP PRP + P S +
Sbjct: 169 GALTSTSPPPPPRRVPLPKLVKGLPRPPRITPSNTSEI 206
>SB_46327| Best HMM Match : Rho_N (HMM E-Value=4.2e-05)
Length = 856
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -3
Query: 200 GAASYCGDPPTPRGVPLP--AAPTPRPSVLAPLAAS 99
GA + PP PR VPLP PRP + P AS
Sbjct: 87 GALTNTSPPPPPRRVPLPKLLKGLPRPPRIIPSNAS 122
>SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Frame = -3
Query: 182 GDPPTPRGVPL------PAAPTPRPSVLAPLAASAVRQQTFL 75
G PP G+P+ P A +PRPS+L + +R+ T +
Sbjct: 510 GVPPASSGIPVSISTSNPNATSPRPSILRKRTSEGLRKPTIV 551
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Frame = -3
Query: 239 PGRSTAV----WDRSPGGAASYCGDPPTPRGVPLPAAPTPRPSV 120
PGRS + + P G AS PP P+G P P P R V
Sbjct: 3800 PGRSKNISGPPGPQGPPGQASQIPGPPGPQGPPGPPGPPGRDVV 3843
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Frame = -3
Query: 176 PPTPRG---VPLPAAPTPRPSVLAPLAAS 99
PP P G VP P P+P PS L+PL+++
Sbjct: 807 PPLPEGLRPVPSPRTPSPMPS-LSPLSST 834
>SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Frame = -3
Query: 185 CGDPPTPRGVPLPA-APTPRP 126
CGDPP P P P PTP P
Sbjct: 92 CGDPPPPATPPPPTMPPTPPP 112
>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
Length = 2059
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = -1
Query: 427 ETERREQDEIQYGEAEGREATSREQYGHPSDYVQS*DERVEHPQMV 290
+ ++R+Q E+Q +AE R+ +Q G P Q+ D++ + Q V
Sbjct: 1747 QEQQRQQHELQQQQAEQRQRERSQQQGQPRQSQQN-DQQQQQQQGV 1791
>SB_15859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +1
Query: 280 PSSIPFVDVLRARLSSEHSRRDVHTVLGRWLHDLRPLHTVFRPVHAVQFR 429
P S P D R ++ SR +H W+ +RPL V P+ + R
Sbjct: 764 PPSSPSGDEWRQPFTARRSRPHLHGFKSIWIRWIRPLIRVINPLFYQRLR 813
>SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092)
Length = 1146
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Frame = -3
Query: 239 PGRSTAVWD-RSPGGAASYCGDPPTPRGVPLPAAPTPRPSVLAPLAASAVRQQ 84
P ST + R P GA PP P + PA P ++ L RQQ
Sbjct: 957 PDGSTVYYQTRQPAGAPQQTPQPPQPAQIMRPAHPQMISQPVSSLGRLPTRQQ 1009
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,481,546
Number of Sequences: 59808
Number of extensions: 430042
Number of successful extensions: 1918
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1880
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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