Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10l17f
(658 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory car... 119 2e-27
AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synapt... 119 2e-27
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 31 0.54
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 31 0.54
U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction... 30 1.3
U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction... 30 1.3
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction... 30 1.3
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction... 30 1.3
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 30 1.7
U64859-11|AAC69097.2| 337|Caenorhabditis elegans Hypothetical p... 29 2.2
AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen prot... 29 2.2
Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical pr... 29 2.9
AF043698-2|AAB97559.3| 700|Caenorhabditis elegans Hypothetical ... 29 2.9
AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical... 29 2.9
Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical p... 29 3.8
AC024200-6|AAF35998.1| 314|Caenorhabditis elegans Hypothetical ... 29 3.8
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu... 28 5.1
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein. 28 5.1
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 28 5.1
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 28 5.1
AC024859-11|AAK29981.1| 933|Caenorhabditis elegans Hypothetical... 28 5.1
AC024859-10|ABA00158.1| 832|Caenorhabditis elegans Hypothetical... 28 5.1
Z81135-1|CAB03453.1| 627|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p... 28 6.7
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr... 28 6.7
U80029-11|AAB37590.1| 155|Caenorhabditis elegans Hypothetical p... 28 6.7
U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death abno... 28 6.7
AY438643-1|AAR00670.1| 627|Caenorhabditis elegans abnormal DAue... 28 6.7
AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate ada... 28 6.7
Z81548-1|CAB04464.1| 1217|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z79756-9|CAK12562.1| 830|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z79756-8|CAB02122.1| 891|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z79756-7|CAK12561.1| 855|Caenorhabditis elegans Hypothetical pr... 27 8.9
U56966-4|AAA98719.2| 906|Caenorhabditis elegans Ace(angiotensin... 27 8.9
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr... 27 8.9
U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protei... 27 8.9
M28528-1|AAA28076.1| 288|Caenorhabditis elegans protein ( C.ele... 27 8.9
AF000264-1|AAC71123.1| 657|Caenorhabditis elegans Heat shock pr... 27 8.9
>AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory
carrier membrane protein protein.
Length = 335
Score = 119 bits (287), Expect = 2e-27
Identities = 56/159 (35%), Positives = 88/159 (55%), Gaps = 1/159 (0%)
Frame = +2
Query: 170 SAGRHNNWPPLPGFCPIQPCFYQDINVDIPLEFQRIVRHLYHLWMFYALVLALNIVGGM- 346
+A R +NWPPLP PI+PCFYQDI V+IP++FQ+ V Y++++ Y L L +N++ +
Sbjct: 112 NAPRPHNWPPLPTIIPIEPCFYQDIEVEIPVQFQKTVTFAYYVFLMYVLALVVNVLASLF 171
Query: 347 XXXXXXXXXXXXXXXXXYFVLFTPFSFVCWYRPIYKAFRSDSSXXXXXXXXXXXXXXXXT 526
LF+P SF+ W+RP+YKAFR+DSS T
Sbjct: 172 YMIFAGGSIGQLFLACIQLALFSPCSFLFWFRPVYKAFRNDSSFNFMVFFFVLFFHCIFT 231
Query: 527 VVQSIGFSDGGSCGLITSISQFKTNIAVGIITLMVTIGF 643
VQ++G S+ +CG I ++ F ++ + ++ L+ I F
Sbjct: 232 FVQTLGLSN-YACGWINALDTFNVSVPIALLMLISAITF 269
>AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synaptic
vesicle protein)homolog protein 1 protein.
Length = 335
Score = 119 bits (287), Expect = 2e-27
Identities = 56/159 (35%), Positives = 88/159 (55%), Gaps = 1/159 (0%)
Frame = +2
Query: 170 SAGRHNNWPPLPGFCPIQPCFYQDINVDIPLEFQRIVRHLYHLWMFYALVLALNIVGGM- 346
+A R +NWPPLP PI+PCFYQDI V+IP++FQ+ V Y++++ Y L L +N++ +
Sbjct: 112 NAPRPHNWPPLPTIIPIEPCFYQDIEVEIPVQFQKTVTFAYYVFLMYVLALVVNVLASLF 171
Query: 347 XXXXXXXXXXXXXXXXXYFVLFTPFSFVCWYRPIYKAFRSDSSXXXXXXXXXXXXXXXXT 526
LF+P SF+ W+RP+YKAFR+DSS T
Sbjct: 172 YMIFAGGSIGQLFLACIQLALFSPCSFLFWFRPVYKAFRNDSSFNFMVFFFVLFFHCIFT 231
Query: 527 VVQSIGFSDGGSCGLITSISQFKTNIAVGIITLMVTIGF 643
VQ++G S+ +CG I ++ F ++ + ++ L+ I F
Sbjct: 232 FVQTLGLSN-YACGWINALDTFNVSVPIALLMLISAITF 269
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 31.5 bits (68), Expect = 0.54
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = -3
Query: 302 STNGIDDGRSSGTRVVCRR*YPGRSTAVWDRSPGGAASYCGDP-PTPRGVPLPAAPTPRP 126
S+ G D G SSG Y G S++ + S GG + +P P P P +
Sbjct: 412 SSGGGDAGASSGGESSSAGGYSGSSSSGGEASSGGYSGGSSEPAPAPEAAPASSGGYSGG 471
Query: 125 SVLAPLAASA 96
S AP AA A
Sbjct: 472 SEAAPEAAPA 481
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 31.5 bits (68), Expect = 0.54
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = -3
Query: 302 STNGIDDGRSSGTRVVCRR*YPGRSTAVWDRSPGGAASYCGDP-PTPRGVPLPAAPTPRP 126
S+ G D G SSG Y G S++ + S GG + +P P P P +
Sbjct: 412 SSGGGDAGASSGGESSSAGGYSGSSSSGGEASSGGYSGGSSEPAPAPEAAPASSGGYSGG 471
Query: 125 SVLAPLAASA 96
S AP AA A
Sbjct: 472 SEAAPEAAPA 481
>U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction
molecule protein1, isoform b protein.
Length = 944
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -3
Query: 176 PPTPRGVPL-PAAPTPRPSVLAPLAASAVRQQTFLTITLHY 57
PP P V L P+AP P P PL+++ V T T T HY
Sbjct: 15 PPPPASVVLHPSAPPPPPP---PLSSTEVVGNTTTTTTTHY 52
>U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction
molecule protein1, isoform c protein.
Length = 1148
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -3
Query: 176 PPTPRGVPL-PAAPTPRPSVLAPLAASAVRQQTFLTITLHY 57
PP P V L P+AP P P PL+++ V T T T HY
Sbjct: 15 PPPPASVVLHPSAPPPPPP---PLSSTEVVGNTTTTTTTHY 52
>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
molecule protein1, isoform d protein.
Length = 1439
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -3
Query: 176 PPTPRGVPL-PAAPTPRPSVLAPLAASAVRQQTFLTITLHY 57
PP P V L P+AP P P PL+++ V T T T HY
Sbjct: 15 PPPPASVVLHPSAPPPPPP---PLSSTEVVGNTTTTTTTHY 52
>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
molecule protein1, isoform a protein.
Length = 1480
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -3
Query: 176 PPTPRGVPL-PAAPTPRPSVLAPLAASAVRQQTFLTITLHY 57
PP P V L P+AP P P PL+++ V T T T HY
Sbjct: 15 PPPPASVVLHPSAPPPPPP---PLSSTEVVGNTTTTTTTHY 52
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -3
Query: 197 AASYCGDPPTPRGVPLPAAPTPRPSVLAPLAASAV 93
AA G PP RG P PAAP P + L A+A+
Sbjct: 39 AAPARGAPPAARGRPAPAAPANVPGLDPRLLAAAL 73
>U64859-11|AAC69097.2| 337|Caenorhabditis elegans Hypothetical
protein R09F10.8 protein.
Length = 337
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -1
Query: 445 RPVPAHETERREQDEIQYGEAEGREATSREQYGH 344
RP+ E E +QD+ +Y E E +E+ +++ H
Sbjct: 239 RPIKKFEREEEDQDDDEYSEVEEKESHPKKRREH 272
>AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen protein
102 protein.
Length = 460
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -3
Query: 239 PGRS-TAVWDRSPGGAASYCGDPPTPRGVPLPAAPTPRPSVLAPLAASA 96
PG+ A D +PG A+YC P PR L A P+ AP AA+A
Sbjct: 253 PGKDGDAGADGAPGTDAAYC--PCPPRSAALGAGGGAEPAGAAPEAAAA 299
>Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical
protein T13F2.3b protein.
Length = 1076
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -3
Query: 242 YPGRSTAVWDRSPGGAASYCGDPPTPRGVPLPAAPTPRP 126
YP ++ A +PG A G P TP+ P P+P
Sbjct: 283 YPAQAPAAPRTTPGSAGPGTGPPGTPQRPQYPQGTNPQP 321
>Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical
protein T13F2.3a protein.
Length = 1074
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -3
Query: 242 YPGRSTAVWDRSPGGAASYCGDPPTPRGVPLPAAPTPRP 126
YP ++ A +PG A G P TP+ P P+P
Sbjct: 281 YPAQAPAAPRTTPGSAGPGTGPPGTPQRPQYPQGTNPQP 319
>AF043698-2|AAB97559.3| 700|Caenorhabditis elegans Hypothetical
protein C54G6.2 protein.
Length = 700
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/48 (29%), Positives = 29/48 (60%)
Frame = -2
Query: 432 HTKLNGVNRTKYSMERPKVVKPPPENSMDIPPTMFRAKTSA*NIHKWY 289
H + N +++ +++PKV+ PPP N + PT +R ++S H+++
Sbjct: 52 HVQHNHISQN--GIQQPKVILPPP-NPYNTAPTHYRRRSST-EAHRYH 95
>AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical
protein F41E6.11 protein.
Length = 316
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = -3
Query: 191 SYCGDPP--TPRGVPLPAAPTPRP-SVLAPLAASA 96
+YC PP P P+ A P PRP V AP A A
Sbjct: 184 TYCAVPPCPAPAATPVYAQPAPRPMPVYAPAPACA 218
>Z77662-14|CAI79239.1| 245|Caenorhabditis elegans Hypothetical
protein F47B8.13 protein.
Length = 245
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = -3
Query: 242 YPGRSTAVW-DRSPGGAASYCGDPPTPRGVPLP-AAPTPRPSVLAPLAAS 99
YP + V D + GGAA P P P P AAP P P LA S
Sbjct: 85 YPTKKRRVARDYAEGGAAPTAPAEPVPAPAPEPEAAPAPAPVAEPALAPS 134
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -3
Query: 242 YPGRSTAVW-DRSPGGAASYCGDPPTPRGVPLPAAPTPRPSVLAPLAASA 96
YP + V D + GGAA P P P P AP P + LAP A A
Sbjct: 159 YPAKKRRVARDYAEGGAAPAAPAEPAPEPAPAP-APAPE-AALAPETAPA 206
>AC024200-6|AAF35998.1| 314|Caenorhabditis elegans Hypothetical
protein Y71F9AL.9 protein.
Length = 314
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 176 PPTPRGVPLPAAPTPRPSVLAPLAASAVR 90
P T + P PA P P+V AP ++S +
Sbjct: 86 PETTQSAPAPAKAAPAPTVAAPASSSVTK 114
>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
guidance protein 2,isoform a protein.
Length = 2886
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 280 PSSIPFVDVLRARLSSEHSRRDVHTVLGRWLHDLRPLHTV 399
P + F+D +R L S+H RD+ V LH + +H +
Sbjct: 1134 PHVVDFIDSMRVNLESDHD-RDITVVTKLRLHFAKLIHLI 1172
>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
Length = 2914
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 280 PSSIPFVDVLRARLSSEHSRRDVHTVLGRWLHDLRPLHTV 399
P + F+D +R L S+H RD+ V LH + +H +
Sbjct: 1134 PHVVDFIDSMRVNLESDHD-RDITVVTKLRLHFAKLIHLI 1172
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 173 PTPRGVPLPAAPTPRPSVLAPL 108
PT R P+PA+P PRP P+
Sbjct: 98 PTIRPPPIPASPPPRPPASEPV 119
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 173 PTPRGVPLPAAPTPRPSVLAPL 108
PT R P+PA+P PRP P+
Sbjct: 320 PTIRPPPIPASPPPRPPASEPV 341
>AC024859-11|AAK29981.1| 933|Caenorhabditis elegans Hypothetical
protein Y71H2AM.15a protein.
Length = 933
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 176 PPTPRGVPLPAAPTPRPSVLAP 111
PP+P P+P P P P +L P
Sbjct: 782 PPSPLTAPIPPPPPPPPPMLPP 803
>AC024859-10|ABA00158.1| 832|Caenorhabditis elegans Hypothetical
protein Y71H2AM.15b protein.
Length = 832
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 176 PPTPRGVPLPAAPTPRPSVLAP 111
PP+P P+P P P P +L P
Sbjct: 681 PPSPLTAPIPPPPPPPPPMLPP 702
>Z81135-1|CAB03453.1| 627|Caenorhabditis elegans Hypothetical
protein W01G7.1 protein.
Length = 627
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 185 CGDPPTPRGVPLPAAPTPRPSVLAPLA 105
C PP P P P P P+P+ + P++
Sbjct: 509 CNRPPLPPLPPPPPPPKPKPAPVQPIS 535
>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
protein F36A2.13 protein.
Length = 2944
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -3
Query: 167 PRGVPL--PAAPTPRPSVLAPLAASAVRQQTFL 75
P VP+ P A P PS++A +AAS+ ++ L
Sbjct: 1822 PANVPIVRPVAENPSPSIMASIAASSAARERAL 1854
>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical protein
F36A2.13 protein.
Length = 2944
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -3
Query: 167 PRGVPL--PAAPTPRPSVLAPLAASAVRQQTFL 75
P VP+ P A P PS++A +AAS+ ++ L
Sbjct: 1822 PANVPIVRPVAENPSPSIMASIAASSAARERAL 1854
>U80029-11|AAB37590.1| 155|Caenorhabditis elegans Hypothetical
protein T20D4.7 protein.
Length = 155
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 188 NW-PPLPGFCPIQPCFYQDINVDIPLEF 268
+W PP GF PI FY+++N + + F
Sbjct: 49 HWCPPCRGFTPILKDFYEEVNEEFEIVF 76
>U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death
abnormality protein 6 protein.
Length = 492
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -3
Query: 209 SPGGAASYCGDPPTPRGVPLPAAPTPRPSVLAPLAASAVRQ 87
S G + S +P G P P+ P PRP LAP A R+
Sbjct: 297 SNGASPSVSPASTSPSG-PAPSIPPPRPPALAPPPPVAPRR 336
>AY438643-1|AAR00670.1| 627|Caenorhabditis elegans abnormal DAuer
Formation DAF-5,a Ski oncogene homolog involved in a
neuronal TGF betapathway (71.0 kD) (daf-5) protein.
Length = 627
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 185 CGDPPTPRGVPLPAAPTPRPSVLAPLA 105
C PP P P P P P+P+ + P++
Sbjct: 509 CNRPPLPPLPPPPPPPKPKPAPVQPIS 535
>AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate
adaptor protein CED-6 protein.
Length = 492
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -3
Query: 209 SPGGAASYCGDPPTPRGVPLPAAPTPRPSVLAPLAASAVRQ 87
S G + S +P G P P+ P PRP LAP A R+
Sbjct: 297 SNGASPSVSPASTSPSG-PAPSIPPPRPPALAPPPPVAPRR 336
>Z81548-1|CAB04464.1| 1217|Caenorhabditis elegans Hypothetical
protein F54F12.1 protein.
Length = 1217
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -3
Query: 179 DPPTPRGVPLPAAPTPRPSVLAP 111
DPP P V P P P P V AP
Sbjct: 775 DPPAPLPVLPPVVPAPAPVVPAP 797
>Z79756-9|CAK12562.1| 830|Caenorhabditis elegans Hypothetical
protein F53C11.5c protein.
Length = 830
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -3
Query: 176 PPTPRGVPLPAAPTPRPSVL-APLAASAVRQQTFLT 72
P +P P+ P+PRPS L AP + + T LT
Sbjct: 418 PSQSSNIPPPSLPSPRPSALPAPGFSRQISSATTLT 453
>Z79756-8|CAB02122.1| 891|Caenorhabditis elegans Hypothetical
protein F53C11.5b protein.
Length = 891
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -3
Query: 176 PPTPRGVPLPAAPTPRPSVL-APLAASAVRQQTFLT 72
P +P P+ P+PRPS L AP + + T LT
Sbjct: 479 PSQSSNIPPPSLPSPRPSALPAPGFSRQISSATTLT 514
>Z79756-7|CAK12561.1| 855|Caenorhabditis elegans Hypothetical
protein F53C11.5a protein.
Length = 855
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -3
Query: 176 PPTPRGVPLPAAPTPRPSVL-APLAASAVRQQTFLT 72
P +P P+ P+PRPS L AP + + T LT
Sbjct: 443 PSQSSNIPPPSLPSPRPSALPAPGFSRQISSATTLT 478
>U56966-4|AAA98719.2| 906|Caenorhabditis elegans Ace(angiotensin
converting enzyme)-like non-peptidase protein 1, isoform
a protein.
Length = 906
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 224 PCFYQDINVDIPLEFQRIVRHLYHLWMFYALVLA 325
PC Q I++D ++ L HLW+ Y +A
Sbjct: 296 PCALQKIDMDSIFRNEKDASRLQHLWVSYVTAIA 329
>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical protein
F42C5.10 protein.
Length = 1292
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Frame = +1
Query: 574 HKYQSVQN*HSRWHH-HADGDXRLHH 648
H Y +V H HH H DG +HH
Sbjct: 938 HHYDTVHVQHHHHHHYHTDGSEHVHH 963
>U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protein
173 protein.
Length = 325
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 239 PGRSTAVWDRSPGGAASYCGDPPTPRG 159
PG+S A R P G ++C +P T G
Sbjct: 298 PGKSGAAGARGPAGPCNHCPNPRTAPG 324
>M28528-1|AAA28076.1| 288|Caenorhabditis elegans protein (
C.elegans heat shockprotein 4 gene, 3' end. ).
Length = 288
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -3
Query: 242 YPGRSTAVWDRSPGGAASYCGDPPTPRGVP 153
Y G V D G G PP PRGVP
Sbjct: 99 YEGERPMVMDNHKLGNFDVTGIPPAPRGVP 128
>AF000264-1|AAC71123.1| 657|Caenorhabditis elegans Heat shock
protein protein 4 protein.
Length = 657
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -3
Query: 242 YPGRSTAVWDRSPGGAASYCGDPPTPRGVP 153
Y G V D G G PP PRGVP
Sbjct: 468 YEGERPMVMDNHKLGNFDVTGIPPAPRGVP 497
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,966,078
Number of Sequences: 27780
Number of extensions: 308567
Number of successful extensions: 1710
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 1454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1686
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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