Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l17f
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   1.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   4.5  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    21   7.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.8  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   7.8  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -3

Query: 182 GDPPTPRGVPLPAAPTPRPSVLAPLAA 102
           GD  TP   P PA P P PS   P +A
Sbjct: 333 GDSDTP---PKPAPPPPPPSSSGPDSA 356


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 167 PRGVPLPAAPTPRPSVLAPLAASA 96
           PRG  LP   TP P+ +  L   A
Sbjct: 151 PRGGSLPTPVTPTPTTVQQLLRRA 174


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 363 PENSMDIPPTMFR 325
           PE++MD  PT FR
Sbjct: 23  PEDTMDYIPTRFR 35


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
 Frame = -3

Query: 182 GDPPTPRGVPLP-----AAPTPRPSVLAPLAASAVRQ 87
           G PP P   P P     A P+  PS +    AS + Q
Sbjct: 37  GSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASGIHQ 73


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +1

Query: 283 SSIPFVDVLRARLSSEHSRRDVHTVLGRWL 372
           S++PF  +  A L+++ +  D   ++ RW+
Sbjct: 308 STVPFNFMFIADLNNQSTASDFKQLIDRWV 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,687
Number of Sequences: 438
Number of extensions: 4318
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)