BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10l16r (353 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ... 29 0.21 SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 28 0.48 SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 27 0.64 SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy... 26 2.0 SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce... 26 2.0 SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 25 2.6 SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 25 3.4 SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po... 25 4.5 SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 25 4.5 SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa... 24 6.0 SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 24 6.0 SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 24 6.0 SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch... 24 7.9 SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 24 7.9 SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 24 7.9 >SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr 2|||Manual Length = 339 Score = 29.1 bits (62), Expect = 0.21 Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Frame = +2 Query: 155 FNFFPQFLNCFLRTLSQRI*AIVFFRSISF-DECMHIGEADSQQDNQQLVHFGYLRTSSR 331 F+ + Q + CF+R +S S+ + E + IG ++++N + + + + Sbjct: 130 FHIYSQLIMCFIREMSFENAEETLNASLPYKSEIIGIGLDSNEENNPPIKFLKVFQRARQ 189 Query: 332 IGYRIT 349 +GYR+T Sbjct: 190 LGYRLT 195 >SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosaccharomyces pombe|chr 1|||Manual Length = 487 Score = 27.9 bits (59), Expect = 0.48 Identities = 16/49 (32%), Positives = 23/49 (46%) Frame = -2 Query: 259 VHAFVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGT 113 V A +K+D +E S L TIE+L+ K E+ P K F + Sbjct: 128 VQALIKQDFEREHTSPPELPTKLVNTIEKLKVKEENEAPPVIPAKPFSS 176 >SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 2344 Score = 27.5 bits (58), Expect = 0.64 Identities = 15/57 (26%), Positives = 29/57 (50%) Frame = +3 Query: 141 GAKADSTFSLNSSIVFFALSASVFRLLSSLGASRLTNACTLARQIANKIISSLFILD 311 G A + F ++ SIV+ A+ ++V + + A ++ NK+ S L++LD Sbjct: 410 GYMAITKFEVSQSIVYSAIVSAVAEFIRQILAEDQLLLNNFFEELKNKLESDLYLLD 466 >SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces pombe|chr 3|||Manual Length = 496 Score = 25.8 bits (54), Expect = 2.0 Identities = 13/43 (30%), Positives = 22/43 (51%) Frame = +3 Query: 171 NSSIVFFALSASVFRLLSSLGASRLTNACTLARQIANKIISSL 299 N S+ F L A+ + S +N C LA+++ ++SSL Sbjct: 121 NPSLCSFTLPATWSEPPLQISLSTSSNGCRLAQRLLRHVVSSL 163 >SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces pombe|chr 2|||Manual Length = 292 Score = 25.8 bits (54), Expect = 2.0 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = -1 Query: 125 KLWHDGRQLQRIL*KSEARGSTESL-RSNFLVSKYITPN 12 K W DGR+ RIL ++E R S ++ RSN +Y N Sbjct: 216 KKWSDGRR-DRILKQAEERRSNRAVGRSNLSGREYFESN 253 >SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 821 Score = 25.4 bits (53), Expect = 2.6 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = -2 Query: 229 KEDNSLNTLAESAKKTIEELREKVESAL 146 KE NS++ L+ S +KTIE R + S + Sbjct: 371 KEKNSISELSPSLQKTIEWARVNLASTI 398 >SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharomyces pombe|chr 1|||Manual Length = 520 Score = 25.0 bits (52), Expect = 3.4 Identities = 14/55 (25%), Positives = 27/55 (49%) Frame = -2 Query: 253 AFVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEF 89 + K + EDN AE ++T + ++++ +A ET K+F +D F + Sbjct: 51 SLAKTEILHEDNPGLLEAEGLERTYKFRQDQLAPNVALETATKSFSLDLDKFGGY 105 >SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces pombe|chr 1|||Manual Length = 283 Score = 24.6 bits (51), Expect = 4.5 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -2 Query: 232 PKEDNSLNTLAESAKKTIEELREKVESA 149 PKED +T+ E +K I EKV+ A Sbjct: 65 PKEDALYSTIREEYQKAINIQNEKVQLA 92 >SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 355 Score = 24.6 bits (51), Expect = 4.5 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 7/68 (10%) Frame = -2 Query: 247 VKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKK-------NFGTMVDSFNEF 89 +K+ P E ++ T E + E+ + ++ + + N+ + F+EF Sbjct: 13 MKKKKPNESSNRITFTEDDSSSSEQEHAPIPNSFSSQITAASDASKDDNYDASIYGFDEF 72 Query: 88 YKNLKPAE 65 Y ++K AE Sbjct: 73 YDSMKSAE 80 >SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosaccharomyces pombe|chr 1|||Manual Length = 503 Score = 24.2 bits (50), Expect = 6.0 Identities = 18/59 (30%), Positives = 27/59 (45%) Frame = -2 Query: 250 FVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNLK 74 FVK + SLN + +++ K +E +KV P K F V+ +Y NLK Sbjct: 156 FVKLEEKHYSPSLNAMEQTSPKEEDEKSDKV-----PRVDKVCFTCGVNCSQTWYHNLK 209 >SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 721 Score = 24.2 bits (50), Expect = 6.0 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%) Frame = -2 Query: 193 AKKTIEELREKVESALAPETVK-KNFGTMVDSFNEFYKNL 77 A+K IEE E E A A E ++ +NF T V+ E +K L Sbjct: 418 AEKAIEEAAE-AERAEADERLRLENFSTWVNEKRETHKIL 456 >SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr 3|||Manual Length = 1316 Score = 24.2 bits (50), Expect = 6.0 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = -1 Query: 341 CSRFVKTFSNIQNEQAADYLVGYLPRQC 258 C ++F N+ +D LVG+LPR C Sbjct: 597 CVSNYRSFINVTAR--SDVLVGFLPRSC 622 >SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 217 Score = 23.8 bits (49), Expect = 7.9 Identities = 11/35 (31%), Positives = 20/35 (57%) Frame = -2 Query: 256 HAFVKRDAPKEDNSLNTLAESAKKTIEELREKVES 152 H F ++ E + L+ + KKTIE +++V+S Sbjct: 172 HPFSQQLEQDEADKLDFAIQEVKKTIEMYKQQVQS 206 >SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 456 Score = 23.8 bits (49), Expect = 7.9 Identities = 12/46 (26%), Positives = 24/46 (52%) Frame = +3 Query: 111 IVPKFFLTVSGAKADSTFSLNSSIVFFALSASVFRLLSSLGASRLT 248 ++ KF+ K DS+F + +VF ++ V R+ + AS ++ Sbjct: 185 LLSKFYSKFHHKKEDSSFDPLAPLVFAPNTSRVLRVTNEANASAIS 230 >SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component of oxoglutarate dehydrogenase complex |Schizosaccharomyces pombe|chr 2|||Manual Length = 452 Score = 23.8 bits (49), Expect = 7.9 Identities = 11/41 (26%), Positives = 21/41 (51%) Frame = -3 Query: 231 LKKTIA*IRWLRVRRKQLRN*GKKLNPPWPRRLLRKTLARW 109 + K++A + W R +++ PP+P + TLA+W Sbjct: 28 VSKSMANVLWARYASTRIKT------PPFPESITEGTLAQW 62 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,419,429 Number of Sequences: 5004 Number of extensions: 26202 Number of successful extensions: 97 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 96 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 97 length of database: 2,362,478 effective HSP length: 65 effective length of database: 2,037,218 effective search space used: 105935336 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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