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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l16r
         (353 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ...    29   0.21 
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    28   0.48 
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   0.64 
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    26   2.0  
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce...    26   2.0  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   2.6  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    25   3.4  
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    25   4.5  
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    25   4.5  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    24   6.0  
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    24   6.0  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    24   6.0  
SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch...    24   7.9  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    24   7.9  
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    24   7.9  

>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 339

 Score = 29.1 bits (62), Expect = 0.21
 Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +2

Query: 155 FNFFPQFLNCFLRTLSQRI*AIVFFRSISF-DECMHIGEADSQQDNQQLVHFGYLRTSSR 331
           F+ + Q + CF+R +S          S+ +  E + IG   ++++N  +      + + +
Sbjct: 130 FHIYSQLIMCFIREMSFENAEETLNASLPYKSEIIGIGLDSNEENNPPIKFLKVFQRARQ 189

Query: 332 IGYRIT 349
           +GYR+T
Sbjct: 190 LGYRLT 195


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 27.9 bits (59), Expect = 0.48
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -2

Query: 259 VHAFVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGT 113
           V A +K+D  +E  S   L      TIE+L+ K E+   P    K F +
Sbjct: 128 VQALIKQDFEREHTSPPELPTKLVNTIEKLKVKEENEAPPVIPAKPFSS 176


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 27.5 bits (58), Expect = 0.64
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = +3

Query: 141 GAKADSTFSLNSSIVFFALSASVFRLLSSLGASRLTNACTLARQIANKIISSLFILD 311
           G  A + F ++ SIV+ A+ ++V   +  + A           ++ NK+ S L++LD
Sbjct: 410 GYMAITKFEVSQSIVYSAIVSAVAEFIRQILAEDQLLLNNFFEELKNKLESDLYLLD 466


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 171 NSSIVFFALSASVFRLLSSLGASRLTNACTLARQIANKIISSL 299
           N S+  F L A+       +  S  +N C LA+++   ++SSL
Sbjct: 121 NPSLCSFTLPATWSEPPLQISLSTSSNGCRLAQRLLRHVVSSL 163


>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 292

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 125 KLWHDGRQLQRIL*KSEARGSTESL-RSNFLVSKYITPN 12
           K W DGR+  RIL ++E R S  ++ RSN    +Y   N
Sbjct: 216 KKWSDGRR-DRILKQAEERRSNRAVGRSNLSGREYFESN 253


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 229 KEDNSLNTLAESAKKTIEELREKVESAL 146
           KE NS++ L+ S +KTIE  R  + S +
Sbjct: 371 KEKNSISELSPSLQKTIEWARVNLASTI 398


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -2

Query: 253 AFVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEF 89
           +  K +   EDN     AE  ++T +  ++++   +A ET  K+F   +D F  +
Sbjct: 51  SLAKTEILHEDNPGLLEAEGLERTYKFRQDQLAPNVALETATKSFSLDLDKFGGY 105


>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 232 PKEDNSLNTLAESAKKTIEELREKVESA 149
           PKED   +T+ E  +K I    EKV+ A
Sbjct: 65  PKEDALYSTIREEYQKAINIQNEKVQLA 92


>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
 Frame = -2

Query: 247 VKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKK-------NFGTMVDSFNEF 89
           +K+  P E ++  T  E    + E+    + ++ + +           N+   +  F+EF
Sbjct: 13  MKKKKPNESSNRITFTEDDSSSSEQEHAPIPNSFSSQITAASDASKDDNYDASIYGFDEF 72

Query: 88  YKNLKPAE 65
           Y ++K AE
Sbjct: 73  YDSMKSAE 80


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -2

Query: 250 FVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNLK 74
           FVK +      SLN + +++ K  +E  +KV     P   K  F   V+    +Y NLK
Sbjct: 156 FVKLEEKHYSPSLNAMEQTSPKEEDEKSDKV-----PRVDKVCFTCGVNCSQTWYHNLK 209


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 193 AKKTIEELREKVESALAPETVK-KNFGTMVDSFNEFYKNL 77
           A+K IEE  E  E A A E ++ +NF T V+   E +K L
Sbjct: 418 AEKAIEEAAE-AERAEADERLRLENFSTWVNEKRETHKIL 456


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 341 CSRFVKTFSNIQNEQAADYLVGYLPRQC 258
           C    ++F N+     +D LVG+LPR C
Sbjct: 597 CVSNYRSFINVTAR--SDVLVGFLPRSC 622


>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 256 HAFVKRDAPKEDNSLNTLAESAKKTIEELREKVES 152
           H F ++    E + L+   +  KKTIE  +++V+S
Sbjct: 172 HPFSQQLEQDEADKLDFAIQEVKKTIEMYKQQVQS 206


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 111 IVPKFFLTVSGAKADSTFSLNSSIVFFALSASVFRLLSSLGASRLT 248
           ++ KF+      K DS+F   + +VF   ++ V R+ +   AS ++
Sbjct: 185 LLSKFYSKFHHKKEDSSFDPLAPLVFAPNTSRVLRVTNEANASAIS 230


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -3

Query: 231 LKKTIA*IRWLRVRRKQLRN*GKKLNPPWPRRLLRKTLARW 109
           + K++A + W R    +++       PP+P  +   TLA+W
Sbjct: 28  VSKSMANVLWARYASTRIKT------PPFPESITEGTLAQW 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,419,429
Number of Sequences: 5004
Number of extensions: 26202
Number of successful extensions: 97
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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