BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10l15r (779 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 29 0.99 SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 4.0 SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 26 7.0 SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 7.0 SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 9.2 >SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr 3|||Manual Length = 1275 Score = 28.7 bits (61), Expect = 0.99 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -2 Query: 778 TCGRCRCEQCARPRPLPSRWLCGSCLCSAEACVDYAS 668 T G C C R R PS++ C SC C+ + +++ S Sbjct: 399 TNGGCYSYIC-RSRSCPSKYQCYSCRCARNSSLEFTS 434 >SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces pombe|chr 1|||Manual Length = 604 Score = 26.6 bits (56), Expect = 4.0 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = +3 Query: 135 HVTVSRKFETFDVRATRSHTFTL*NYIYKVLVDDSHSERGAHVRRRPR 278 H R++E R++R+H +Y Y+ L DD S R RPR Sbjct: 184 HSRSRRRYEERSSRSSRAH-----DYDYEDLRDDDRSHERKRSRSRPR 226 >SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosaccharomyces pombe|chr 2|||Manual Length = 533 Score = 25.8 bits (54), Expect = 7.0 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%) Frame = -2 Query: 778 TCGRCRCEQCA--RPRPLPSRWLCGS 707 TCG CEQCA R R P+ CG+ Sbjct: 268 TCGHHFCEQCAITRYRKTPTCIQCGA 293 >SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual Length = 188 Score = 25.8 bits (54), Expect = 7.0 Identities = 13/49 (26%), Positives = 21/49 (42%) Frame = +3 Query: 72 FLNLLWICVESKILTLTFFL*HVTVSRKFETFDVRATRSHTFTL*NYIY 218 F LL+ + + + F H VS +F + HTFT+ + Y Sbjct: 28 FFPLLYSFIFATLHAFVFLFSHTLVSSQFRRLKLPYHHHHTFTIEAFFY 76 >SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces pombe|chr 1|||Manual Length = 1811 Score = 25.4 bits (53), Expect = 9.2 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = +1 Query: 124 FFYDTLRSQENLRLSTFGRHVHIHS 198 F Y TL L ST G +VH H+ Sbjct: 581 FVYHTLNDIPQLNSSTIGSYVHSHN 605 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,481,328 Number of Sequences: 5004 Number of extensions: 40931 Number of successful extensions: 88 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 88 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 88 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 377352472 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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