BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10l15r (779 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 09_04_0581 - 18684273-18685814,18686156-18686200,18686393-18686683 33 0.25 03_05_0777 + 27636342-27637115 32 0.44 12_01_0630 - 5203802-5204111,5204896-5204900 29 3.1 01_06_0453 + 29501600-29502403 29 3.1 04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539 29 4.1 03_06_0202 - 32327551-32327907,32328006-32328068,32328195-32329163 29 4.1 01_06_1285 - 35995943-35996087,35996909-35997697,35997802-359978... 29 4.1 12_02_0616 - 21246374-21246462,21246605-21247702,21247800-212481... 29 5.5 03_03_0025 + 13848450-13849420,13850921-13851131,13851327-138514... 29 5.5 12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406 28 9.6 06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176 28 9.6 >09_04_0581 - 18684273-18685814,18686156-18686200,18686393-18686683 Length = 625 Score = 33.1 bits (72), Expect = 0.25 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = +1 Query: 283 PHSTDRHSDH*VHPRAVRSLPLANKYLYNA 372 P STD H H VHP + S P A+++L +A Sbjct: 174 PSSTDHHRRHKVHPAFLHSAPSADRFLASA 203 >03_05_0777 + 27636342-27637115 Length = 257 Score = 32.3 bits (70), Expect = 0.44 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +3 Query: 249 RGAHVRRRPRATTLHGQAQRSLSPPPRGPKPA 344 R A + R AT L + +R+L PPP P PA Sbjct: 187 RDAALSNRAEATALRAELERALQPPPPPPPPA 218 >12_01_0630 - 5203802-5204111,5204896-5204900 Length = 104 Score = 29.5 bits (63), Expect = 3.1 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%) Frame = +3 Query: 252 GAHVRRRPRATTLHGQAQRSLSPPPRGPKPAARQ----*IFVQRGRAARLGASEG 404 G VRRR R TL + R++S R P+P +R+ + QR R GAS G Sbjct: 2 GTRVRRRWRDGTLRPPSCRAISRRYRSPRPRSREDDTDRVDEQRLRVLAAGASPG 56 >01_06_0453 + 29501600-29502403 Length = 267 Score = 29.5 bits (63), Expect = 3.1 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Frame = +3 Query: 219 KVLVDDSHSERGAHVRRRP-RATTLHGQAQRSLSPPPRGPKPA 344 KV V S S + R P +A Q QR+ PPPR P PA Sbjct: 165 KVAVKKSSSSEVRKLERAPAQAQRQVLQVQRAQPPPPRAPAPA 207 >04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539 Length = 585 Score = 29.1 bits (62), Expect = 4.1 Identities = 18/51 (35%), Positives = 24/51 (47%) Frame = +3 Query: 231 DDSHSERGAHVRRRPRATTLHGQAQRSLSPPPRGPKPAARQ*IFVQRGRAA 383 DD H+E + RR R+ + Q L+PPP P +Q I G AA Sbjct: 211 DDDHAEAARNGVRRWRSGSGQQQPSTILAPPPPTPTRQKQQGIVFGGGAAA 261 >03_06_0202 - 32327551-32327907,32328006-32328068,32328195-32329163 Length = 462 Score = 29.1 bits (62), Expect = 4.1 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = -3 Query: 516 VQRRERRCTRGVAAPAVVVRTLSRGSPVLSSPA 418 V+ R+RR T G APAVV + S +P ++ A Sbjct: 408 VKERDRRRTAGALAPAVVKQQPSESAPATAAAA 440 >01_06_1285 - 35995943-35996087,35996909-35997697,35997802-35997871, 35997989-35998220 Length = 411 Score = 29.1 bits (62), Expect = 4.1 Identities = 19/76 (25%), Positives = 29/76 (38%) Frame = +3 Query: 231 DDSHSERGAHVRRRPRATTLHGQAQRSLSPPPRGPKPAARQ*IFVQRGRAARLGASEGAG 410 D S RG H +R A ++ SPP P + + GR + A G G Sbjct: 209 DGYRSSRGRHAQRAAAAAAQEELSREETSPPTASTSPETLEALIKADGRV--MAAVTGGG 266 Query: 411 GARRD*IILESRG*GS 458 R ++++ GS Sbjct: 267 RTRASSVLMQLISCGS 282 >12_02_0616 - 21246374-21246462,21246605-21247702,21247800-21248110, 21248550-21249251,21252802-21252912,21253396-21253481, 21253753-21253862,21254085-21254236,21254656-21254765 Length = 922 Score = 28.7 bits (61), Expect = 5.5 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 3/33 (9%) Frame = -2 Query: 730 PSRWLCGSCLCSAEACVDYA---SCMCCVKALF 641 PS W+C + C A D C CC+ LF Sbjct: 327 PSTWICKNAACKAVLTADNTFCKRCSCCICHLF 359 >03_03_0025 + 13848450-13849420,13850921-13851131,13851327-13851459, 13851576-13851832 Length = 523 Score = 28.7 bits (61), Expect = 5.5 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = +3 Query: 243 SERGAHVRRRPRATTLHGQAQRSLSPPPRGPK 338 S G+ + RRP+ L Q+ S PPP P+ Sbjct: 119 SSGGSRLARRPKKGILKAQSSSSAPPPPPSPE 150 >12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406 Length = 351 Score = 27.9 bits (59), Expect = 9.6 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%) Frame = +3 Query: 279 ATTLHGQAQRSLSPPPRGPKPA---ARQ*IFVQRGRAARLGASEGAGGARRD 425 AT ++ + SPPP P PA + + F RAAR SE + GA + Sbjct: 105 ATARRKRSASARSPPPARPPPATNTSAEERFPASPRAARKDLSEASSGAEEE 156 >06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176 Length = 427 Score = 27.9 bits (59), Expect = 9.6 Identities = 11/32 (34%), Positives = 16/32 (50%) Frame = -2 Query: 361 NIYWRAAGFGPRGGGLSDRCACPWSVVARGRR 266 N++ + G G GGG + CPW+ G R Sbjct: 40 NVFDQEVGVGGEGGGGGEGSGCPWARPCDGCR 71 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,736,155 Number of Sequences: 37544 Number of extensions: 377228 Number of successful extensions: 1488 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 1413 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1482 length of database: 14,793,348 effective HSP length: 81 effective length of database: 11,752,284 effective search space used: 2091906552 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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