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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l15r
         (779 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0581 - 18684273-18685814,18686156-18686200,18686393-18686683     33   0.25 
03_05_0777 + 27636342-27637115                                         32   0.44 
12_01_0630 - 5203802-5204111,5204896-5204900                           29   3.1  
01_06_0453 + 29501600-29502403                                         29   3.1  
04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539     29   4.1  
03_06_0202 - 32327551-32327907,32328006-32328068,32328195-32329163     29   4.1  
01_06_1285 - 35995943-35996087,35996909-35997697,35997802-359978...    29   4.1  
12_02_0616 - 21246374-21246462,21246605-21247702,21247800-212481...    29   5.5  
03_03_0025 + 13848450-13849420,13850921-13851131,13851327-138514...    29   5.5  
12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406     28   9.6  
06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176           28   9.6  

>09_04_0581 - 18684273-18685814,18686156-18686200,18686393-18686683
          Length = 625

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 283 PHSTDRHSDH*VHPRAVRSLPLANKYLYNA 372
           P STD H  H VHP  + S P A+++L +A
Sbjct: 174 PSSTDHHRRHKVHPAFLHSAPSADRFLASA 203


>03_05_0777 + 27636342-27637115
          Length = 257

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 249 RGAHVRRRPRATTLHGQAQRSLSPPPRGPKPA 344
           R A +  R  AT L  + +R+L PPP  P PA
Sbjct: 187 RDAALSNRAEATALRAELERALQPPPPPPPPA 218


>12_01_0630 - 5203802-5204111,5204896-5204900
          Length = 104

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = +3

Query: 252 GAHVRRRPRATTLHGQAQRSLSPPPRGPKPAARQ----*IFVQRGRAARLGASEG 404
           G  VRRR R  TL   + R++S   R P+P +R+     +  QR R    GAS G
Sbjct: 2   GTRVRRRWRDGTLRPPSCRAISRRYRSPRPRSREDDTDRVDEQRLRVLAAGASPG 56


>01_06_0453 + 29501600-29502403
          Length = 267

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 219 KVLVDDSHSERGAHVRRRP-RATTLHGQAQRSLSPPPRGPKPA 344
           KV V  S S     + R P +A     Q QR+  PPPR P PA
Sbjct: 165 KVAVKKSSSSEVRKLERAPAQAQRQVLQVQRAQPPPPRAPAPA 207


>04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539
          Length = 585

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 231 DDSHSERGAHVRRRPRATTLHGQAQRSLSPPPRGPKPAARQ*IFVQRGRAA 383
           DD H+E   +  RR R+ +   Q    L+PPP  P    +Q I    G AA
Sbjct: 211 DDDHAEAARNGVRRWRSGSGQQQPSTILAPPPPTPTRQKQQGIVFGGGAAA 261


>03_06_0202 - 32327551-32327907,32328006-32328068,32328195-32329163
          Length = 462

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 516 VQRRERRCTRGVAAPAVVVRTLSRGSPVLSSPA 418
           V+ R+RR T G  APAVV +  S  +P  ++ A
Sbjct: 408 VKERDRRRTAGALAPAVVKQQPSESAPATAAAA 440


>01_06_1285 -
           35995943-35996087,35996909-35997697,35997802-35997871,
           35997989-35998220
          Length = 411

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/76 (25%), Positives = 29/76 (38%)
 Frame = +3

Query: 231 DDSHSERGAHVRRRPRATTLHGQAQRSLSPPPRGPKPAARQ*IFVQRGRAARLGASEGAG 410
           D   S RG H +R   A      ++   SPP     P   + +    GR   + A  G G
Sbjct: 209 DGYRSSRGRHAQRAAAAAAQEELSREETSPPTASTSPETLEALIKADGRV--MAAVTGGG 266

Query: 411 GARRD*IILESRG*GS 458
             R   ++++    GS
Sbjct: 267 RTRASSVLMQLISCGS 282


>12_02_0616 -
           21246374-21246462,21246605-21247702,21247800-21248110,
           21248550-21249251,21252802-21252912,21253396-21253481,
           21253753-21253862,21254085-21254236,21254656-21254765
          Length = 922

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
 Frame = -2

Query: 730 PSRWLCGSCLCSAEACVDYA---SCMCCVKALF 641
           PS W+C +  C A    D      C CC+  LF
Sbjct: 327 PSTWICKNAACKAVLTADNTFCKRCSCCICHLF 359


>03_03_0025 +
           13848450-13849420,13850921-13851131,13851327-13851459,
           13851576-13851832
          Length = 523

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 243 SERGAHVRRRPRATTLHGQAQRSLSPPPRGPK 338
           S  G+ + RRP+   L  Q+  S  PPP  P+
Sbjct: 119 SSGGSRLARRPKKGILKAQSSSSAPPPPPSPE 150


>12_02_1063 - 25769821-25770365,25770513-25771010,25771394-25771406
          Length = 351

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +3

Query: 279 ATTLHGQAQRSLSPPPRGPKPA---ARQ*IFVQRGRAARLGASEGAGGARRD 425
           AT    ++  + SPPP  P PA   + +  F    RAAR   SE + GA  +
Sbjct: 105 ATARRKRSASARSPPPARPPPATNTSAEERFPASPRAARKDLSEASSGAEEE 156


>06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176
          Length = 427

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 361 NIYWRAAGFGPRGGGLSDRCACPWSVVARGRR 266
           N++ +  G G  GGG  +   CPW+    G R
Sbjct: 40  NVFDQEVGVGGEGGGGGEGSGCPWARPCDGCR 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,736,155
Number of Sequences: 37544
Number of extensions: 377228
Number of successful extensions: 1488
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1482
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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