Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l15r
         (779 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54729| Best HMM Match : Sprouty (HMM E-Value=4.4e-11)               52   4e-07
SB_38999| Best HMM Match : Transp_Tc5_C (HMM E-Value=6.5)              44   2e-04
SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.11 
SB_29076| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.79 
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)                      30   2.4  
SB_51044| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_12521| Best HMM Match : Sprouty (HMM E-Value=0.48)                  29   4.2  
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_31963| Best HMM Match : Integrin_beta (HMM E-Value=0)               28   9.8  

>SB_54729| Best HMM Match : Sprouty (HMM E-Value=4.4e-11)
          Length = 308

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 27/69 (39%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
 Frame = -2

Query: 706 CLCSAEACVDYASCMCCVKALFYHXXXXXXXXXXXX---------XXXPRLACVGALAVP 554
           C   +E  VDYA+CMCCVK LFYH                        PR  C+G LA+ 
Sbjct: 213 CGFDSEEVVDYATCMCCVKGLFYHCTKDSEDEGSMADEPCSCTGPACVPRWGCLGLLALL 272

Query: 553 LPCLWLYWP 527
           +PC+W Y P
Sbjct: 273 MPCIWCYLP 281


>SB_38999| Best HMM Match : Transp_Tc5_C (HMM E-Value=6.5)
          Length = 111

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 14/21 (66%), Positives = 18/21 (85%)
 Frame = -2

Query: 697 SAEACVDYASCMCCVKALFYH 635
           +A+ C+DY +CMCC KALFYH
Sbjct: 26  AADRCIDYCTCMCCAKALFYH 46


>SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = -2

Query: 682 VDYASCMCCVKALFYH 635
           +D  +CMCCV+ALFYH
Sbjct: 481 IDVCTCMCCVQALFYH 496


>SB_29076| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 257

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +3

Query: 273 PRATTLHGQAQRSLSPPPRGPKPAARQ*IFVQRGRAARLGASEG 404
           PRA+ + G+  ++ +PPPR PKP+A +       ++   GA EG
Sbjct: 197 PRASKMFGEKTKA-TPPPRPPKPSAGK--LCSPSKSVPTGAKEG 237


>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
          Length = 2442

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 739  RPLPSRWLCGSCLCSAEACVDYASCMCC 656
            RP P  W CG+C+   +A  D  +C+ C
Sbjct: 1722 RPPPGSWECGTCMIQNKA--DVTTCVAC 1747


>SB_51044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
 Frame = +3

Query: 210 YIYKVLVDDSHSERGA---HVRRRPRATTL-HGQAQRSLSPPPRGP 335
           +IY++L      E+GA    + R  + T L  G+ Q+SLSPPP+ P
Sbjct: 450 WIYRMLSHIDIKEKGATSEFMMRTHQPTCLVSGRCQKSLSPPPQPP 495


>SB_12521| Best HMM Match : Sprouty (HMM E-Value=0.48)
          Length = 314

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 706 CLCSAEACVDYASCMCCVK 650
           C  + E+ VD A+CMCCVK
Sbjct: 152 CGRTVESLVDTATCMCCVK 170


>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2174

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 267  RRPRATTLHGQAQRSLSPPPRGPKPAAR 350
            RRPR        +RS +PPPR P P++R
Sbjct: 1747 RRPRPGPETEPPRRSRAPPPRPPPPSSR 1774


>SB_31963| Best HMM Match : Integrin_beta (HMM E-Value=0)
          Length = 628

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
 Frame = -2

Query: 772 GRCRCEQCARPRPLPSRWLCGSC-LCSAEACVDYASCMCCVKA 647
           G C C QC   R    ++ C  C  C    C     C+ CV A
Sbjct: 478 GTCTCGQCTCTRKYSGKY-CEECPSCEGGICRRSEDCLKCVTA 519


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,195,334
Number of Sequences: 59808
Number of extensions: 368582
Number of successful extensions: 1460
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1459
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)