BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10l15r (779 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z35604-2|CAA84677.1| 809|Caenorhabditis elegans Hypothetical pr... 29 2.8 U19744-1|AAA85704.1| 809|Caenorhabditis elegans integrin beta p... 29 2.8 >Z35604-2|CAA84677.1| 809|Caenorhabditis elegans Hypothetical protein ZK1058.2 protein. Length = 809 Score = 29.5 bits (63), Expect = 2.8 Identities = 14/40 (35%), Positives = 17/40 (42%) Frame = -2 Query: 775 CGRCRCEQCARPRPLPSRWLCGSCLCSAEACVDYASCMCC 656 CGRCRC S C C CV+Y +C+ C Sbjct: 625 CGRCRCFDSPDGNRY-SGAKCEICPTCPTKCVEYKNCVMC 663 >U19744-1|AAA85704.1| 809|Caenorhabditis elegans integrin beta pat-3 protein. Length = 809 Score = 29.5 bits (63), Expect = 2.8 Identities = 14/40 (35%), Positives = 17/40 (42%) Frame = -2 Query: 775 CGRCRCEQCARPRPLPSRWLCGSCLCSAEACVDYASCMCC 656 CGRCRC S C C CV+Y +C+ C Sbjct: 625 CGRCRCFDSPDGNRY-SGAKCEICPTCPTKCVEYKNCVMC 663 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,396,912 Number of Sequences: 27780 Number of extensions: 263464 Number of successful extensions: 735 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 700 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 735 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1882685842 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -