Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l15f
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1070 + 30579263-30579861,30579970-30580095,30580190-30580394     29   3.9  
04_03_0193 + 12477565-12478229,12478298-12478423,12478508-12478688     28   5.1  
08_02_0021 + 11307795-11308093,11308454-11308556,11309623-113099...    28   6.8  
07_03_0698 - 20765305-20768526                                         28   6.8  
08_02_1446 + 27156449-27156790,27157961-27158042,27158698-271587...    27   8.9  

>04_04_1070 + 30579263-30579861,30579970-30580095,30580190-30580394
          Length = 309

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = -3

Query: 605 HRQEP----HSQREGSGRGRAHCSQRHRPHVSHTI 513
           H+++P    HS+   +G GR HCS+R +  V  TI
Sbjct: 175 HKRKPCAGGHSEATANG-GRCHCSKRRKNRVKRTI 208


>04_03_0193 + 12477565-12478229,12478298-12478423,12478508-12478688
          Length = 323

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 605 HRQEPHSQREGSGRGRAHCSQRHRPHVSHTI 513
           H +     + GS  GR HCS+R +  V  TI
Sbjct: 200 HSENVAGGKYGSTGGRCHCSKRRKHRVKRTI 230


>08_02_0021 +
           11307795-11308093,11308454-11308556,11309623-11309931,
           11310190-11310618
          Length = 379

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 166 NFSEEVGTMREQEGDGPESR*PDSMDE 246
           +FSE+VG + E E + P  R PD +DE
Sbjct: 331 SFSEDVG-INEDEEENPPDRIPDMVDE 356


>07_03_0698 - 20765305-20768526
          Length = 1073

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +2

Query: 101 PHEFGTVTKNAVVEIRSRNQRRTSARKWGR*GNRKATARRAVSRTRW 241
           P E  T  +     +R RNQRRT+A  W         +RRA+    W
Sbjct: 134 PVEVTTTMEPRDASVRPRNQRRTNAGSWNN------PSRRAILEDGW 174


>08_02_1446 +
           27156449-27156790,27157961-27158042,27158698-27158792,
           27159421-27159492,27159572-27159651,27159728-27159827,
           27160064-27160141,27160408-27160455,27160570-27160638,
           27161035-27161175,27161262-27161516
          Length = 453

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = -3

Query: 605 HRQEPHSQREGSGRGRAHCSQRH-RPHVSH 519
           H   P  Q  G G G  H  Q+H +PH  H
Sbjct: 47  HHANPRRQHRGGGGGAYHHHQQHYQPHHHH 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,268,231
Number of Sequences: 37544
Number of extensions: 207866
Number of successful extensions: 875
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)