Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l15f
         (616 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14352| Best HMM Match : NHL (HMM E-Value=2.8026e-45)                28   5.2  
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)                   28   6.9  

>SB_14352| Best HMM Match : NHL (HMM E-Value=2.8026e-45)
          Length = 784

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
 Frame = +1

Query: 394 RTH-VSPAAAHAGAHQPLKPVTTQPXXXXXXXXXXXXXXDSIVCETCGRCRCEQCARPRP 570
           RTH V+P A+  G  +  +  T QP               +  C TC    C +CA    
Sbjct: 179 RTHCVTPLASQTGPDREEEQSTGQPPDLSRCSTHTNEEF-AFYCHTCSTLVCRECAVEHE 237

Query: 571 LPS 579
            PS
Sbjct: 238 KPS 240


>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
          Length = 638

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +3

Query: 102 RTSSERSQKTPSSRSEVEINEELQRGSGDDEGTGRR 209
           R  S  S+  PSS S    N  L+RG   D G  RR
Sbjct: 347 RRESRNSESKPSSSSSKNRNTGLERGRVQDFGRDRR 382


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,514,966
Number of Sequences: 59808
Number of extensions: 213172
Number of successful extensions: 897
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)