BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10l15f (616 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CU457741-3|CAM36344.1| 204|Caenorhabditis elegans Hypothetical ... 30 1.1 AF077529-4|AAC26255.2| 783|Caenorhabditis elegans Hypothetical ... 28 4.6 AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ... 28 4.6 U97012-3|AAK39144.2| 588|Caenorhabditis elegans Groundhog (hedg... 28 6.1 Z81576-3|CAB04641.1| 534|Caenorhabditis elegans Hypothetical pr... 27 8.1 U64605-3|AAF98605.3| 423|Caenorhabditis elegans Hypothetical pr... 27 8.1 >CU457741-3|CAM36344.1| 204|Caenorhabditis elegans Hypothetical protein C42C1.3 protein. Length = 204 Score = 30.3 bits (65), Expect = 1.1 Identities = 11/33 (33%), Positives = 24/33 (72%) Frame = +2 Query: 83 RISAVNPHEFGTVTKNAVVEIRSRNQRRTSARK 181 ++S + PH+ +V KNA+ ++S+ +++TS +K Sbjct: 156 KLSKIAPHQHSSVVKNAI--MKSKREKKTSCKK 186 >AF077529-4|AAC26255.2| 783|Caenorhabditis elegans Hypothetical protein C09E8.1a protein. Length = 783 Score = 28.3 bits (60), Expect = 4.6 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Frame = +3 Query: 99 IRTSSERSQKTPSSRSEVEINE-ELQRGSGDDEG 197 IR S + ++R E++E EL RG+GDD G Sbjct: 734 IRAHSVEHNRPSNTREASEVDEAELPRGAGDDNG 767 >AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical protein H20J04.2 protein. Length = 1427 Score = 28.3 bits (60), Expect = 4.6 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%) Frame = +1 Query: 508 DSIVCETCGRCRCEQCAR---PRPLPSRWLCGSC 600 D ++C C C +CA+ P+ W+C SC Sbjct: 1126 DLVLCSECDNCYHLKCAKLDVNSDAPADWMCTSC 1159 >U97012-3|AAK39144.2| 588|Caenorhabditis elegans Groundhog (hedgehog-like family)protein 9 protein. Length = 588 Score = 27.9 bits (59), Expect = 6.1 Identities = 16/42 (38%), Positives = 24/42 (57%) Frame = +2 Query: 92 AVNPHEFGTVTKNAVVEIRSRNQRRTSARKWGR*GNRKATAR 217 A NP++ T+N V RSRN T+ RK GR G + +++ Sbjct: 244 AENPYQ----TRNGVNNYRSRNSYGTNNRKHGRNGKKGKSSK 281 >Z81576-3|CAB04641.1| 534|Caenorhabditis elegans Hypothetical protein R10E8.4 protein. Length = 534 Score = 27.5 bits (58), Expect = 8.1 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = -2 Query: 183 HFLAEVLR*FLLLISTTAFFVTVPNSCGFTALIL 82 H + E+LR +L+ F +TVP+ G A IL Sbjct: 117 HHITEILRKREILLKVNEFVLTVPSKNGHVASIL 150 >U64605-3|AAF98605.3| 423|Caenorhabditis elegans Hypothetical protein C05D9.3 protein. Length = 423 Score = 27.5 bits (58), Expect = 8.1 Identities = 10/27 (37%), Positives = 14/27 (51%) Frame = +1 Query: 511 SIVCETCGRCRCEQCARPRPLPSRWLC 591 S VC G+C+C QC +P + C Sbjct: 277 SPVCSASGKCKCGQCQCNKPTVTGKFC 303 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,234,568 Number of Sequences: 27780 Number of extensions: 152576 Number of successful extensions: 512 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 489 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 510 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1332243108 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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