Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l15f
         (616 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27750.1 68414.m03391 ubiquitin system component Cue domain-c...    28   4.3  
At3g22270.1 68416.m02815 expressed protein                             28   5.7  
At5g54150.1 68418.m06743 expressed protein similar to unknown pr...    27   9.9  
At1g62180.1 68414.m07014 5'-adenylylsulfate reductase 2, chlorop...    27   9.9  

>At1g27750.1 68414.m03391 ubiquitin system component Cue
            domain-containing protein very low similarity to ASC-1
            complex subunit P100 [Homo sapiens] GI:12061187; contains
            Pfam profile PF02845: CUE domain
          Length = 1973

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 99   IRTSSERSQKTPSSRSEVEINEELQRGSGDDEGTGRRRPG 218
            +     + +   SS +  E+N E + G G   G GRR  G
Sbjct: 1912 VNREQPQEKSNESSNNNSEVNTEAENGGGRGRGRGRRGGG 1951


>At3g22270.1 68416.m02815 expressed protein
          Length = 782

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 120 SQKTPSSRSEVEINEELQRGSGDDEGTGRRRPGEPL 227
           S + P +  EV+ +     GSGD +G+G+    EPL
Sbjct: 451 SVRRPHALLEVDSSPGFNDGSGDHKGSGKHLEQEPL 486


>At5g54150.1 68418.m06743 expressed protein similar to unknown
           protein (pir||T05871)
          Length = 198

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 511 SIVCETCGRCRCEQCARPRPLPSRWLCGSCLCSA 612
           SI+ ET G+C C  C +P P  + W   +  C+A
Sbjct: 156 SIIHET-GQCYCYVCDKPAPC-AEWTISTSHCNA 187


>At1g62180.1 68414.m07014 5'-adenylylsulfate reductase 2,
           chloroplast (APR2) (APSR) / adenosine 5'-phosphosulfate
           5'-adenylylsulfate (APS) sulfotransferase 2 /
           3'-phosphoadenosine-5'-phosphosulfate (PAPS) reductase
           homolog 43 (PRH-43) identical to SP|P92981
           5'-adenylylsulfate reductase 2, chloroplast precursor
           (EC 1.8.4.9) (Adenosine 5'-phosphosulfate
           5'-adenylylsulfate sulfotransferase 2) (APS
           sulfotransferase 2) (Thioredoxin independent APS
           reductase 2) (3'-phosphoadenosine-5'-phosphosulfate
           reductase homolog 43) (PAPS reductase homolog 43)
           (Prh-43) {Arabidopsis thaliana}; identical to cDNA PAPS
           reductase homolog (PRH43) GI:1710115
          Length = 454

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 108 SSERSQKTPSSRSEVEINEELQRGSGDDEGTGRRRPGEPLAGLDG 242
           + +R  ++P +RSE+ I +      G D G G      PLA ++G
Sbjct: 215 TGQRKDQSPGTRSEIPIVQVDPVFEGLDGGVGSLVKWNPLANVEG 259


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,674,871
Number of Sequences: 28952
Number of extensions: 138947
Number of successful extensions: 452
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)