Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l14r
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    26   2.2  
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...    25   6.6  
SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces...    24   8.7  

>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 147 LINNKEDSDTPKYFVIKHLVKI 212
           L NN E S TP Y    HL K+
Sbjct: 274 LANNVEKSQTPSYMSANHLPKV 295


>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -1

Query: 399 DVHERR*PLTISWAVCSSAYTALKNKITS*LCSSSTHIR 283
           DVH  R P  I W+   + Y      + +   ++S H++
Sbjct: 75  DVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLK 113


>SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 268

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 229 FLNLCNIFTKCFMTKYFGVSLSSLLFIKFYVS 134
           FLNL  +F       Y  +  SS+LF+  Y S
Sbjct: 187 FLNLLKLFEVDLSESYIELKSSSILFVYDYSS 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,731,778
Number of Sequences: 5004
Number of extensions: 32274
Number of successful extensions: 43
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)