BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10l14r (432 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 26 2.2 SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 25 6.6 SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces... 24 8.7 >SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A |Schizosaccharomyces pombe|chr 1|||Manual Length = 450 Score = 26.2 bits (55), Expect = 2.2 Identities = 11/22 (50%), Positives = 12/22 (54%) Frame = +3 Query: 147 LINNKEDSDTPKYFVIKHLVKI 212 L NN E S TP Y HL K+ Sbjct: 274 LANNVEKSQTPSYMSANHLPKV 295 >SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|Schizosaccharomyces pombe|chr 2|||Manual Length = 335 Score = 24.6 bits (51), Expect = 6.6 Identities = 10/39 (25%), Positives = 18/39 (46%) Frame = -1 Query: 399 DVHERR*PLTISWAVCSSAYTALKNKITS*LCSSSTHIR 283 DVH R P I W+ + Y + + ++S H++ Sbjct: 75 DVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLK 113 >SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 268 Score = 24.2 bits (50), Expect = 8.7 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = -3 Query: 229 FLNLCNIFTKCFMTKYFGVSLSSLLFIKFYVS 134 FLNL +F Y + SS+LF+ Y S Sbjct: 187 FLNLLKLFEVDLSESYIELKSSSILFVYDYSS 218 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,731,778 Number of Sequences: 5004 Number of extensions: 32274 Number of successful extensions: 43 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 43 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 154067960 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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