Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l14f
         (482 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61953-2|AAC48081.1|  356|Caenorhabditis elegans Seven tm recept...    27   5.4  
AC024882-15|AAF60936.1|  688|Caenorhabditis elegans Hypothetical...    27   5.4  
U67947-2|AAB07558.1|  204|Caenorhabditis elegans Hypothetical pr...    27   7.1  
AL023835-6|CAA19483.1|  144|Caenorhabditis elegans Hypothetical ...    27   7.1  
AL132876-3|CAD21657.2|  746|Caenorhabditis elegans Hypothetical ...    27   9.4  
AL132859-2|CAB60488.1|  315|Caenorhabditis elegans Hypothetical ...    27   9.4  

>U61953-2|AAC48081.1|  356|Caenorhabditis elegans Seven tm receptor
           protein 185 protein.
          Length = 356

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +2

Query: 182 MS*FINSFLKLVQYFY*MFYDKILRCIAIFFIV 280
           +S F N FLK+VQY    F    L CI IF I+
Sbjct: 3   LSEFWNIFLKIVQYTS-AFMSVSLNCILIFLIL 34


>AC024882-15|AAF60936.1|  688|Caenorhabditis elegans Hypothetical
           protein Y9C9A.13 protein.
          Length = 688

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 10/38 (26%), Positives = 26/38 (68%)
 Frame = -2

Query: 289 NLINNKEDSDTPKYFVIKHLVKILHKFKK*IYKLTHFV 176
           N++ + + +   + +V++HL+KIL+++ K I+ +  F+
Sbjct: 371 NILRSSKVTRNEQIYVVRHLLKILNRYLK-IFPIHEFI 407


>U67947-2|AAB07558.1|  204|Caenorhabditis elegans Hypothetical
           protein H03E18.2 protein.
          Length = 204

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 200 SFLKLVQYFY*MFYDKILRCIAIFFIVY*ILCFSYQI*IDYFSNSSN 340
           S  + + +F  M YD  LR I + F ++ I+  +  +   YFS S++
Sbjct: 54  SIAQAISHFVLMLYDCDLRMIDMAFAIWPIVTVTIALVFSYFSYSTH 100


>AL023835-6|CAA19483.1|  144|Caenorhabditis elegans Hypothetical
           protein Y37A1B.6 protein.
          Length = 144

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 189 NL*IHFLNLCNIFTKCFMTKYFGVSL 266
           +L I FL   +IF  CFM  YFG ++
Sbjct: 9   SLKIEFLKFPSIFYYCFMLHYFGKNM 34


>AL132876-3|CAD21657.2|  746|Caenorhabditis elegans Hypothetical
           protein Y105E8A.3 protein.
          Length = 746

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 221 YFY*MFYDKILRCIAIFFI 277
           YF  +   KILRCI +FF+
Sbjct: 25  YFVVLVLTKILRCIGVFFV 43


>AL132859-2|CAB60488.1|  315|Caenorhabditis elegans Hypothetical
           protein Y39C12A.3 protein.
          Length = 315

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 222 IFTKCFMTKYFGVSLSSLLFIKFYVSRTKYK 314
           +FT   M  YFGV   S +F+ + VS   Y+
Sbjct: 150 VFTSVGMVLYFGVCHFSFIFVCYIVSVITYR 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,503,987
Number of Sequences: 27780
Number of extensions: 203089
Number of successful extensions: 382
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)