Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10l13f
(642 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12544| Best HMM Match : DUF1218 (HMM E-Value=2.7) 27 0.50
SB_26361| Best HMM Match : fn3 (HMM E-Value=0) 30 1.8
SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_47160| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_52928| Best HMM Match : PKD (HMM E-Value=0) 27 9.8
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 27 9.8
>SB_12544| Best HMM Match : DUF1218 (HMM E-Value=2.7)
Length = 290
Score = 27.1 bits (57), Expect(2) = 0.50
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 247 VNNLIIDKRRNTMEYCYKLWVGNGQDIV 330
+++L++ +++ YC+ NGQDIV
Sbjct: 130 IHDLLLSLQKHLFAYCHNATSNNGQDIV 157
Score = 23.4 bits (48), Expect(2) = 0.50
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +1
Query: 328 VKKYFPLSFRLIMAGNYVKLIYRNYNLALKLGSTTNPSNERIAYGDGVDKH 480
++ YF L+M+G L+ + +L L S R+ G G D H
Sbjct: 183 IRYYFACFQELLMSGPANSLLQSHLSLFLPCAGEILGSVYRLLVGHGSDTH 233
>SB_26361| Best HMM Match : fn3 (HMM E-Value=0)
Length = 1898
Score = 29.9 bits (64), Expect = 1.8
Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Frame = +1
Query: 412 LKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKAHNTKYNQYLKMS---- 579
L+ GST S++ IA +T L S F R Y AH T Y YL +S
Sbjct: 868 LESGSTLLASDDGIAPNKRTKVYTSLSSDVFY------RFYVYAHTT-YTTYLCLSVNAP 920
Query: 580 -TSTCNCNARDRVV 618
T C N+RDRV+
Sbjct: 921 CTQACRLNSRDRVL 934
>SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 441
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/54 (25%), Positives = 21/54 (38%)
Frame = -3
Query: 313 CRPTACSSTPWCSVSCQ*SDC*LHFERCCPGLGSRIPSSYVQHCRSHR*GCCCT 152
C+ CS++ C SC C L+ + + V C+S G CT
Sbjct: 224 CQQVVCSASGKCDQSCDGEGCNLYCSEGAKTCNQKCQGACVTDCKSRWCGVTCT 277
>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4924
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Frame = -3
Query: 175 HR*GCCCTVCPRGL--G*KGSCCP 110
H+ G C VCPRG+ KG C P
Sbjct: 4552 HKNGFLCVVCPRGMYGNSKGECSP 4575
>SB_47160| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1806
Score = 28.3 bits (60), Expect = 5.6
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +1
Query: 337 YFPLSFRLIMAGN--YVKLIYRNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFIT 510
YFP RLI + NY LA+ LG + + S + G+ VD+ W F
Sbjct: 1387 YFPHMARLIDGQKPWCMSSSSSNYWLAIDLGVSVDVSAVEVK-GNDVDEDINQWIWDFSV 1445
Query: 511 LWENNRVYFKAH 546
+ N+ V +K H
Sbjct: 1446 EYSNDYVQWKQH 1457
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 27.9 bits (59), Expect = 7.4
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +2
Query: 113 TA*ALLTKTSRTNCTTASSPVTTTVLYVRAWNTRAKARAASFKM*LTI*SLTRD--GTPW 286
TA A+ T+ TTA TTT V A T A A++ + T ++ TP
Sbjct: 1206 TAAAVTASTASVVTTTAEKATTTTAAMVEATTTEAAVTASTASVVTTTATIASSTITTPS 1265
Query: 287 STATSCGSATDRILSKSTS 343
+A S +A+ +S +T+
Sbjct: 1266 LSAISTTTASSVQVSAATN 1284
>SB_52928| Best HMM Match : PKD (HMM E-Value=0)
Length = 1624
Score = 27.5 bits (58), Expect = 9.8
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 3/123 (2%)
Frame = -2
Query: 374 FPAMMSLKLNGKYFLTISCPLPTHSL*QYSMVFRLLSMIRLLTTF*TMLP---WPWLSYS 204
FPAM +L +NG + +++ SL ++ R R L M P W S
Sbjct: 519 FPAMAALTMNGSHAVSLWSYGDGSSLKKHESGPRQFITSRHLYAHTGMFPVTVTVWNRLS 578
Query: 203 KLLRTALS*SPVRMLLYSLSSRSWLEGLMLSADSSTTPALAASTHIANTTRSFILLGAFS 24
K TAL+ V++ + ++S S L S +S T + ++H T S+ ++
Sbjct: 579 KKNETALAYVSVQVPVTNISVPS---DLTASLGNSVTFTVKITSHETPTNASYYIIYGNG 635
Query: 23 DRS 15
+RS
Sbjct: 636 ERS 638
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +2
Query: 47 NFSLCSQCACSLPAPASWNYPRTA*ALLTKTSRTNCTTASSPVTTT 184
++ C C CS A TA A T T+ T TTA++ TTT
Sbjct: 511 HYYCCYYCCCSCTAT-------TATATTTATATTTATTAATATTTT 549
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,466,707
Number of Sequences: 59808
Number of extensions: 378633
Number of successful extensions: 1296
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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