Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l12r
         (503 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A)           184   2e-47
At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) simi...   184   3e-47
At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C) ribo...   183   5e-47
At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11, ...    36   0.015
At4g25220.1 68417.m03629 transporter, putative similar to glycer...    28   3.1  
At3g56410.2 68416.m06274 expressed protein                             28   4.1  
At3g56410.1 68416.m06273 expressed protein                             28   4.1  
At5g12370.1 68418.m01455 exocyst complex component Sec10-related...    27   7.2  
At5g53640.1 68418.m06663 F-box family protein contains F-box dom...    27   9.5  
At4g29060.1 68417.m04157 elongation factor Ts family protein sim...    27   9.5  

>At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A)
          Length = 150

 Score =  184 bits (449), Expect = 2e-47
 Identities = 93/140 (66%), Positives = 105/140 (75%)
 Frame = -2

Query: 463 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 284
           M+ RK K  K +V VTLGP    GE VFGV HIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1   MSKRKTKEPKVDV-VTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGM 59

Query: 283 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXGAQXXXXXXX 104
           KVKADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRA           GAQ       
Sbjct: 60  KVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALA 119

Query: 103 XXSMKIGRIEDVTPVPSDST 44
              MKIGRIEDVTP+P+DST
Sbjct: 120 RSGMKIGRIEDVTPIPTDST 139


>At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) similar
           to 40S ribosomal protein S14 GB:P19950 [Zea mays]
          Length = 150

 Score =  184 bits (448), Expect = 3e-47
 Identities = 93/140 (66%), Positives = 104/140 (74%)
 Frame = -2

Query: 463 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 284
           M+ RK K  K E  VTLGP    GE VFGV HIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1   MSKRKTKEPKVET-VTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGM 59

Query: 283 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXGAQXXXXXXX 104
           KVKADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRA           GAQ       
Sbjct: 60  KVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALA 119

Query: 103 XXSMKIGRIEDVTPVPSDST 44
              MKIGRIEDVTP+P+DST
Sbjct: 120 RSGMKIGRIEDVTPIPTDST 139


>At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C)
           ribosomal protein S14 -Zea mays,PIR2:A30097
          Length = 150

 Score =  183 bits (446), Expect = 5e-47
 Identities = 92/140 (65%), Positives = 104/140 (74%)
 Frame = -2

Query: 463 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 284
           M+ RK K  K E  VTLGP    GE VFGV H+FASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1   MSKRKTKEPKVE-NVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGM 59

Query: 283 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXGAQXXXXXXX 104
           KVKADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRA           GAQ       
Sbjct: 60  KVKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALA 119

Query: 103 XXSMKIGRIEDVTPVPSDST 44
              MKIGRIEDVTP+P+DST
Sbjct: 120 RSGMKIGRIEDVTPIPTDST 139


>At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11,
           putative contains Pfam profile: PF00411: Ribosomal
           protein S11
          Length = 314

 Score = 35.9 bits (79), Expect = 0.015
 Identities = 19/73 (26%), Positives = 35/73 (47%)
 Frame = -2

Query: 391 ETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEK 212
           ET   + HI    N+TFV VTD  G       +G +       + + Y A   A+++  +
Sbjct: 190 ETNADIIHIKMLRNNTFVTVTDSKGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRR 249

Query: 211 CKTLGITALHIKL 173
            K +G+ ++ +K+
Sbjct: 250 AKAMGLKSVVVKV 262


>At4g25220.1 68417.m03629 transporter, putative similar to
           glycerol-3-phosphate transporter (glycerol 3-phosphate
           permease) [Homo sapiens] GI:7543982
          Length = 504

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 9   YSLRPLRPPFLRVESDGTGVTSSMR 83
           Y   P+ PP +  E DGT + S+MR
Sbjct: 225 YLFLPVNPPTVEAERDGTEIDSTMR 249


>At3g56410.2 68416.m06274 expressed protein
          Length = 1535

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -1

Query: 242  YVGGTGCSREMQNSWHNGLAHKAPCYWWKQNKDPWSWCSVCTSGSCSFKYEDW 84
            Y  G+ C  E +NSW   +   A     + N +P+ W S   +     +YE W
Sbjct: 1040 YPEGSRC--ESENSWAETMGDGAGLKLEEYNSNPFEWTSEKAAAFHLHEYERW 1090


>At3g56410.1 68416.m06273 expressed protein
          Length = 1488

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -1

Query: 242  YVGGTGCSREMQNSWHNGLAHKAPCYWWKQNKDPWSWCSVCTSGSCSFKYEDW 84
            Y  G+ C  E +NSW   +   A     + N +P+ W S   +     +YE W
Sbjct: 993  YPEGSRC--ESENSWAETMGDGAGLKLEEYNSNPFEWTSEKAAAFHLHEYERW 1043


>At5g12370.1 68418.m01455 exocyst complex component Sec10-related
           low similarity to SP|O00471 Exocyst complex component
           Sec10 (hSec10) {Homo sapiens}
          Length = 858

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 295 TGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITA 188
           +GG+++K D +E   +     A  V EK + LGI A
Sbjct: 777 SGGLRLKRDLNEYVGFVKSFGAPSVDEKFELLGIIA 812


>At5g53640.1 68418.m06663 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 917

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 442 LCFFSGPWLSL*LESCQNLK 501
           LC +   WL   LESC NLK
Sbjct: 807 LCIYDLKWLPTFLESCPNLK 826


>At4g29060.1 68417.m04157 elongation factor Ts family protein
           similar to SP|P35019 Elongation factor Ts (EF-Ts)
           {Galdieria sulphuraria}; contains Pfam profiles PF00627:
           UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
           S1 RNA binding domain
          Length = 953

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
 Frame = -2

Query: 487 SSQAKG*AMAPRKNKVAKEEVQVTLGPQHLVGET----VFGVAHIFASFNDTFVHVTDLS 320
           +SQ++G A   RK+++   + +  +      G+      FG    F +F D  VHV+ LS
Sbjct: 110 TSQSRGTARPGRKSEMPAVKNEELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLS 169

Query: 319 G---RETIARVTGGMKVKADRDEA 257
               ++  + VT G +VK    EA
Sbjct: 170 DNFVKDVSSVVTIGQEVKVRLVEA 193


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,211,917
Number of Sequences: 28952
Number of extensions: 234793
Number of successful extensions: 582
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)