Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10l10r
(773 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 32 0.079
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 31 0.18
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 31 0.24
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 29 0.74
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 27 3.0
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.9
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro... 27 3.9
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 26 5.2
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ... 26 6.9
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 25 9.1
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 32.3 bits (70), Expect = 0.079
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = -2
Query: 769 MLAASAGVX--ELSADTSNPDLEEKLYNSILTGXYDSAVRQSLEYESQGKGSII 614
++ A+AG+ LS + N D+ K+ L G Y +A ++ QGKGS+I
Sbjct: 91 VMIANAGIAIPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 31.1 bits (67), Expect = 0.18
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -2
Query: 307 HNTKYNQYLKMSTTTCNCNSRDRVVYGGNSADSTRE 200
+++ YN+ M T++C+C+S + YGGN A E
Sbjct: 47 YSSTYNEITNMDTSSCSCSSTPK-SYGGNLAPFDEE 81
>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
termination factor Reb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 504
Score = 30.7 bits (66), Expect = 0.24
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = -2
Query: 622 SIIQNVVNNLIIDKRRNTMEYCYKLWVGNGQEIVRKYFPLNFRLIMAGNYVKIIYRNYNL 443
+II V+N I+D+ + ++C ++W G + +R ++ N ++ K IY +
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFYS-NLYKKLSHRDAKSIYHHVRR 305
Query: 442 A 440
A
Sbjct: 306 A 306
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 29.1 bits (62), Expect = 0.74
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 307 HNTKYNQYLKMSTTTCNCNSRDRVVYGGNSA 215
HN +N + + S T+ + SR+ V+ GNS+
Sbjct: 617 HNEMFNSFHRSSVTSASIKSREAVLSAGNSS 647
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Frame = +2
Query: 506 WEVLSNNFLS--VADPQL---VAVLHGVPSLVNDQVVNYILD 616
W+VL +++L+ ++ P V LHGV + VN V +YI D
Sbjct: 188 WDVLFHDYLNETLSQPAFSFNVPDLHGVDNKVNQYVFDYIKD 229
>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = -2
Query: 247 RDRVVYGGNSADSTREQWFFQPAKYENDVLFFIYN 143
R R+V G ++A + + W F +Y ++F+++N
Sbjct: 162 RQRIVVGKHAAHFSLDHWIF-VVEYYAPIVFYVFN 195
>SPAC23H4.10c |thi4||thiamine-phosphate
dipyrophosphorylase/hydroxyethylthiazole kinase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 102 TPRETARPLDTMVKSPVFLTSTRGSLHLSK 13
TPRETA+ L ++ +P R SL K
Sbjct: 207 TPRETAKELRNLIATPPCFAQARSSLTTPK 236
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 619 IIQNVVNNLIIDKRRNTMEYCYKLWVGNGQEIVR 518
+++++ NL I N +EY LW NG I +
Sbjct: 447 VLKDIFFNLQIGVTFNILEYLRHLWSNNGDAIAK 480
>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 25.8 bits (54), Expect = 6.9
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 570 VFRLLSMIRLLTTFWMMEPLPWLSYSKL*RTALSXSPVRMLLYSFSSRSGLEVS 731
+F L + T+ + P P +S K S SP+R+ L SFSS + +
Sbjct: 120 LFGYLQSSGIQNTWGLHAPKPVISIIKKSHHLFSGSPLRLDLNSFSSEDNADAT 173
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 756 ARASXNYPRTLLTQTSRRNCTTASSPAXTTVLSVRAW 646
AR S NY ++ Q SRRN ++P S + W
Sbjct: 622 ARESLNYLKSFNKQLSRRNAPDINNPIADFQNSFQNW 658
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,912,311
Number of Sequences: 5004
Number of extensions: 58225
Number of successful extensions: 187
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -