Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l10r
         (773 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1274 + 28897491-28897707,28897804-28897935,28898029-288980...    28   7.2  
10_07_0057 + 12460986-12461036,12461108-12461161,12461420-124614...    28   9.5  
06_01_1082 - 8847795-8848033,8848511-8848724                           28   9.5  

>06_03_1274 +
           28897491-28897707,28897804-28897935,28898029-28898096,
           28898216-28898280,28898468-28898534,28898630-28898917,
           28898995-28899102,28899236-28899487,28899918-28899997,
           28900092-28900185,28900728-28900810,28901319-28901873,
           28902085-28902616
          Length = 846

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -2

Query: 175 YENDVLFFIYNRQFNDALELGTIVNASGDRKAVGHDGEVAGLPD 44
           Y   V FF YN+ F+  + + T+V  +G+  ++G  G +  L D
Sbjct: 764 YSGSVGFFSYNKTFDLNIVIRTVVLHNGE-ASIGAGGAIVALSD 806


>10_07_0057 +
           12460986-12461036,12461108-12461161,12461420-12461482,
           12461666-12461716,12461996-12462057,12462156-12462318,
           12462829-12462939,12463029-12463166,12463248-12463322,
           12463420-12463540,12464827-12464981,12465080-12465154,
           12465270-12465473,12465670-12465786
          Length = 479

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 486 MMSLKFNGKYFLTISCPLPTHSL*QYSMVFRLLSMI 593
           MM L   GK    I CP+P+HSL   SMV R  +++
Sbjct: 152 MMHLLIRGKKD-GILCPIPSHSLYTDSMVLRGATLV 186


>06_01_1082 - 8847795-8848033,8848511-8848724
          Length = 150

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 241 RVVYGGNSADSTR--EQWFFQPAKYENDVLFFIYNRQFNDALELG 113
           +  Y G++A   R  + W      Y  DVL F YN++++D   +G
Sbjct: 42  KTYYVGDAAGWGRNLDWWLAGKTFYAGDVLVFKYNKEYHDVAVVG 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,907,863
Number of Sequences: 37544
Number of extensions: 402019
Number of successful extensions: 1150
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)