Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l10r
         (773 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64255.1 68414.m07280 SWIM zinc finger family protein contain...    32   0.49 
At5g59210.2 68418.m07421 myosin heavy chain-related contains wea...    29   2.6  
At5g59210.1 68418.m07420 myosin heavy chain-related contains wea...    29   2.6  
At3g42670.1 68416.m04437 SNF2 domain-containing protein / helica...    29   2.6  
At5g62220.1 68418.m07813 exostosin family protein contains Pfam ...    28   6.0  
At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A...    28   6.0  
At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A...    28   6.0  
At1g69390.1 68414.m07966 chloroplast division protein, putative ...    28   6.0  

>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
           Pfam profile PF04434: SWIM zinc finger
          Length = 750

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 595 LIIDKRRNTMEYCYKLWVGNGQEIVRKYFPLNF 497
           +++D +    EY  KL + +G +   KYFPL F
Sbjct: 386 IVVDTKNLNCEYQLKLMIASGVDAANKYFPLAF 418


>At5g59210.2 68418.m07421 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 433

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -2

Query: 706 EKLY--NSILTGXYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRR 575
           EKL+  NS L+  Y  ++  S ++E+Q K  + QNV    ++DK R
Sbjct: 298 EKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 343


>At5g59210.1 68418.m07420 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 434

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -2

Query: 706 EKLY--NSILTGXYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRR 575
           EKL+  NS L+  Y  ++  S ++E+Q K  + QNV    ++DK R
Sbjct: 299 EKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 344


>At3g42670.1 68416.m04437 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to SP|P41410
           DNA repair protein rhp54 (RAD54 homolog)
           {Schizosaccharomyces pombe}; contains PFam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 1256

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +3

Query: 54  PATSPSCPTALRSPEAFTIVPSSKASLNWRL*MKNRTSFSYLAGWKNHCSLVLSALLPP 230
           P  S   P+A  S   ++++P  K  L+    +  + +F +L  WKN    V+ A++ P
Sbjct: 648 PVASSDMPSAEESDNVWSLIPQLKRKLH----LHQKKAFEFL--WKNLAGSVVPAMMDP 700


>At5g62220.1 68418.m07813 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 517

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
 Frame = +3

Query: 54  PATSPSCPTAL----RSPEAFTIVPSSKASLNWRL*MKNRTSFSYLAGWKNHCSLVLSAL 221
           P ++PS P  L    R+P++ T +   K S N    + NR+S  Y+A  ++HC+ ++ +L
Sbjct: 3   PVSNPSSPEHLLKKSRTPDSTTSI-DRKNSFNSLHSVGNRSS--YIAASRSHCTWLILSL 59

Query: 222 L 224
           L
Sbjct: 60  L 60


>At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A20)
           Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
           thaliana]; similar to cytochrome P450 71A4, Solanum
           melongena, PIR2:S36805
          Length = 390

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 703 KLYNSILTGXYDSAVRQSLEYESQGKGSIIQNVVNNLII 587
           K+ + IL+G  D A     EY  Q K   IQN++NN ++
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMV 141


>At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A20)
           Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
           thaliana]; similar to cytochrome P450 71A4, Solanum
           melongena, PIR2:S36805
          Length = 497

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 703 KLYNSILTGXYDSAVRQSLEYESQGKGSIIQNVVNNLII 587
           K+ + IL+G  D A     EY  Q K   IQN++NN ++
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMV 141


>At1g69390.1 68414.m07966 chloroplast division protein, putative
           (MinE1) identical to chloroplast division protein
           homolog MinE1 GI:17511220 from [Arabidopsis thaliana]
          Length = 229

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 769 MLAASAGVXELSADTSNPDLEEKLYNSILTGXYD 668
           +LA + G  ELS   +  ++E  LYN+I  G +D
Sbjct: 70  VLARNTGDYELSPSPAEQEIESFLYNAINMGFFD 103


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,554,314
Number of Sequences: 28952
Number of extensions: 310343
Number of successful extensions: 803
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)