Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l09r
         (745 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48459| Best HMM Match : B12-binding_2 (HMM E-Value=3.3)            194   8e-50
SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)                29   3.0  
SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_58371| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_32850| Best HMM Match : GRP (HMM E-Value=0.089)                     28   7.0  
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   9.2  

>SB_48459| Best HMM Match : B12-binding_2 (HMM E-Value=3.3)
          Length = 115

 Score =  194 bits (472), Expect = 8e-50
 Identities = 88/114 (77%), Positives = 100/114 (87%)
 Frame = -3

Query: 455 VLVDLTDGGLEYTFECIGNVGTMRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVTGR 276
           VLVD+TDGGL+YTFECIGNV TMR ALEACHKGWG SVIIGVAA G+EISTRPFQLVTGR
Sbjct: 1   VLVDMTDGGLDYTFECIGNVHTMRQALEACHKGWGESVIIGVAAGGQEISTRPFQLVTGR 60

Query: 275 TWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGK 114
            WKGTAFGGYKS + VP+LV++YL  K+ +DEFVTHN+ L +INEAF LMH G+
Sbjct: 61  VWKGTAFGGYKSGDGVPQLVEDYLAGKVMVDEFVTHNMGLDKINEAFDLMHRGE 114


>SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)
          Length = 197

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
 Frame = -2

Query: 339 HWC--SCCWRRDQHSSIPTCYRSHLEGNSFWRLQK---*RKCTKACR*VLGEEAAFRRIC 175
           H C  +C WR D+ + I TC     +    WRL +      C   CR  +  +A   R C
Sbjct: 126 HTCKSTCRWRLDRQADIHTC-----KSTCRWRLDRQADIHTCKSTCRWRINRQADIHR-C 179

Query: 174 HSQCAAEGDQ 145
            S C  + D+
Sbjct: 180 KSTCRWQLDR 189


>SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/81 (25%), Positives = 32/81 (39%)
 Frame = +3

Query: 108 DRFSSMHQMECLIDLLQRHIVSDKFV*RQLLLQVLIYKLWYTFSTFVTSKSCSLPGATCN 287
           D +   H  + LI   +RH +   F     L+  + YK W  FS  +       P  TC 
Sbjct: 573 DEYMPSHS-KLLIHRKERHDLERAF---HCLICGVTYKSWRPFSYHLFQAHSDTPPITCP 628

Query: 288 KLEWTSADLFSSSSYTNDH*H 350
                  D+FS  ++  +H H
Sbjct: 629 HCPKKFHDIFSFDNHQKEHRH 649


>SB_58371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
 Frame = -3

Query: 389 MRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVT--GRTWKGTAFGGYKSRE---SVP 225
           ++ AL++C        I  V A  +E+  + F+L++    T    A  G + +E   S  
Sbjct: 38  LQEALQSCSNN-----ISRVQARADELEAKNFELLSKIAETEDQLAETGLRKKEAEESYK 92

Query: 224 KLVDEYLEKKLPLDEFVTHNVP-LKEINEA-FHLMHAG 117
           +LVDE    +  L++  THN   LK I E   HL+  G
Sbjct: 93  RLVDENQSLESRLEQETTHNSELLKRITETEKHLVEIG 130


>SB_32850| Best HMM Match : GRP (HMM E-Value=0.089)
          Length = 676

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
 Frame = -3

Query: 389 MRAALEACHKGWGVSVIIGVAAAGEEISTRPFQLVT--GRTWKGTAFGGYKSRE---SVP 225
           ++ AL++C        I  V A  +E+  + F+L++    T    A  G + +E   S  
Sbjct: 38  LQEALQSCSNN-----ISRVQARADELEAKNFELLSKIAETEDQLAETGLRKKEAEESYK 92

Query: 224 KLVDEYLEKKLPLDEFVTHNVP-LKEINEA-FHLMHAG 117
           +LVDE    +  L++  THN   LK I E   HL+  G
Sbjct: 93  RLVDENQSLESRLEQETTHNSELLKRITETEKHLVEIG 130


>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1449

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = -3

Query: 443  LTDGGLEYTFECIGNVGTMRAALEACHK--GWGVSVIIGVAAAGEEISTRPFQ 291
            +TD   E  +E  G VG  +   + CHK   W   ++  V         RPFQ
Sbjct: 950  VTDMKTEQCYEVFGEVGVKQYRCKICHKTSAWHTGIVYHVRV--HHTHERPFQ 1000


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,819,987
Number of Sequences: 59808
Number of extensions: 441188
Number of successful extensions: 1254
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)