Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l09r
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    26   0.43 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    26   0.43 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    26   0.43 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.0  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   4.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   5.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   9.2  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   9.2  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -3

Query: 206 LEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIR 105
           L   +PLD         ++ +E+F ++HAG+++R
Sbjct: 173 LISSIPLDYIFLIFNQFQDFSESFQILHAGRALR 206


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -3

Query: 206 LEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIR 105
           L   +PLD         ++ +E+F ++HAG+++R
Sbjct: 173 LISSIPLDYIFLIFNQFQDFSESFQILHAGRALR 206


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -3

Query: 206 LEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIR 105
           L   +PLD         ++ +E+F ++HAG+++R
Sbjct: 173 LISSIPLDYIFLIFNQFQDFSESFQILHAGRALR 206


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 492 KFIDSKFLSYLKLVRVDVNTNNAIGTC 572
           +  D    +Y KLVR  VNT++ +  C
Sbjct: 31  RLYDDLLSNYNKLVRPVVNTSDVLRVC 57


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 492 KFIDSKFLSYLKLVRVDVNTNNAIGTC 572
           +  D    +Y KLVR  VNT++ +  C
Sbjct: 31  RLYDDLLSNYNKLVRPVVNTSDVLRVC 57


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 476 YDKPIQQVLVDLTDGGLEYTFECIGN 399
           +D+  Q+V+     G LE  F C+GN
Sbjct: 140 FDQLGQEVIYTACVGLLERAFRCLGN 165


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 395 LHFQYIQKCILDHHQSNPPV 454
           L  +Y+++C+L+  +  PPV
Sbjct: 395 LEMKYLERCLLETLRMYPPV 414


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 352 PHPLWQASSAALMVPTFPIHSKVYSR 429
           PH  WQ S+A L+   F   ++V  R
Sbjct: 105 PHMAWQLSTAHLLAQLFLKSTEVTPR 130


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 539 NPDKFEVAKKFGVNEFVNPKDYDKP 465
           N    E   +FG +  +N K+YD P
Sbjct: 17  NSASLENDNEFGFSYLLNCKNYDHP 41


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -1

Query: 469 NQFNKYWW 446
           N+ NK+WW
Sbjct: 361 NEMNKWWW 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,550
Number of Sequences: 438
Number of extensions: 3986
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)