BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10l09f (627 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d... 258 4e-70 SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase... 258 5e-70 SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo... 58 1e-09 SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p... 39 7e-04 SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ... 36 0.006 SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe... 32 0.078 SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 27 2.2 SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 26 3.9 SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 26 5.1 SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 25 6.8 >SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual Length = 380 Score = 258 bits (633), Expect = 4e-70 Identities = 114/196 (58%), Positives = 141/196 (71%) Frame = +3 Query: 39 TVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGV 218 T GK+I C AAVAW+ PLSIE ++V PP+ EVR+KI +GVCHTDAYTLSGKDPEG+ Sbjct: 6 TAGKIINCKAAVAWQPAAPLSIENVQVFPPRVHEVRIKIVNSGVCHTDAYTLSGKDPEGL 65 Query: 219 FPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFCLNPKTNLCQKVRSTQGQ 398 FPV+L T+V+ GD V+ LY P+C TCKFC + KTNLC ++R+TQG+ Sbjct: 66 FPVILGHEGAGIVESVGPQVTTVQVGDPVIALYTPECKTCKFCKSGKTNLCGRIRTTQGK 125 Query: 399 GVMPDGTRRFRCKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPTGY 578 G+MPDGT RF C G L HFMGCSTFS+YTVV +IS+ + APLD VCLLGCG+ TGY Sbjct: 126 GLMPDGTSRFSCNGNTLLHFMGCSTFSEYTVVADISVVAIERLAPLDSVCLLGCGITTGY 185 Query: 579 GAALNTAKVEPGSNCA 626 GAA TA ++ G + A Sbjct: 186 GAATITADIKEGDSVA 201 >SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase |Schizosaccharomyces pombe|chr 2|||Manual Length = 378 Score = 258 bits (632), Expect = 5e-70 Identities = 117/198 (59%), Positives = 143/198 (72%) Frame = +3 Query: 33 MSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPE 212 MS GK I C AAVAW A +PLSIE+I+V PPKA EVRVK+ + VCHTDAYTLSG DPE Sbjct: 1 MSFEGKTITCKAAVAWGAKEPLSIEDIQVAPPKAHEVRVKVDWSAVCHTDAYTLSGVDPE 60 Query: 213 GVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFCLNPKTNLCQKVRSTQ 392 G FP+VL +V+PGDHV+ LY P+C CKFC + KTNLC K+R TQ Sbjct: 61 GAFPIVLGHEGAGIVESIGEGVINVRPGDHVILLYTPECKECKFCRSGKTNLCSKIRETQ 120 Query: 393 GQGVMPDGTRRFRCKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPT 572 G+G+MPDGT RF C+ + L H+MGCS+FSQYTVV +ISL ++ +APL +CLLGCGV T Sbjct: 121 GRGLMPDGTSRFSCRDKTLLHYMGCSSFSQYTVVADISLVAISHSAPLRSICLLGCGVTT 180 Query: 573 GYGAALNTAKVEPGSNCA 626 G+GA ++AKVE GS A Sbjct: 181 GFGAVTHSAKVESGSTVA 198 >SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharomyces pombe|chr 3|||Manual Length = 350 Score = 57.6 bits (133), Expect = 1e-09 Identities = 42/130 (32%), Positives = 56/130 (43%), Gaps = 4/130 (3%) Frame = +3 Query: 57 KCLAAVAWEAGKPLSI--EEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDP-EGVFPV 227 K LAAV G P ++ EE+ V P EV V I TGVCHTD + L G P P+ Sbjct: 6 KQLAAVFHTHGGPENVKFEEVPVAEPGQDEVLVNIKYTGVCHTDLHALQGDWPLPAKMPL 65 Query: 228 VLXXXXXXXXXXXXXXXTSVKPGDHV-VPLYVPQCNTCKFCLNPKTNLCQKVRSTQGQGV 404 + T +K GD V V C C++C+ + +C + Q G Sbjct: 66 IGGHEGAGVVVKVGAGVTRLKIGDRVGVKWMNSSCGNCEYCMKAEETICPHI---QLSGY 122 Query: 405 MPDGTRRFRC 434 DGT + C Sbjct: 123 TVDGTFQHYC 132 >SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces pombe|chr 2|||Manual Length = 360 Score = 38.7 bits (86), Expect = 7e-04 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 3/81 (3%) Frame = +3 Query: 138 EVRVKITATGVCHTDA-YTLSGKDPEGVF--PVVLXXXXXXXXXXXXXXXTSVKPGDHVV 308 +V+V I ATG+C +D Y G + + P++L +S+KPGD V Sbjct: 31 QVKVAIKATGICGSDVHYWKEGGIGDFILKKPMILGHESAGVVVEVGKGVSSLKPGDPVA 90 Query: 309 PLYVPQCNTCKFCLNPKTNLC 371 C C +C + + NLC Sbjct: 91 VEPGCVCRLCDYCRSGRYNLC 111 >SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase |Schizosaccharomyces pombe|chr 2|||Manual Length = 423 Score = 35.5 bits (78), Expect = 0.006 Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 6/163 (3%) Frame = +3 Query: 63 LAAVAWEAGKPLSIEEIEVDPPKAG---EVRVKITATGVCH-TDAYTLSGKDPEGVFPVV 230 + A W+ PL+++ EV P +V VK TA +C +D++ SG+ P + Sbjct: 37 MKACVWDG--PLNVKIAEVPKPTITHPKDVIVKTTACTICSGSDSHIFSGEMPGIEKGAI 94 Query: 231 LXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFCLNPKTNLCQKVRSTQGQGVMP 410 L +++ GD VV + C C FC + C ++ V Sbjct: 95 LGHESCGIVAEKGDEVNNLEIGDRVVIAFDLACGQCSFCKRHEYAACDTTNDSKLMDV-N 153 Query: 411 DGTRRFRCKG--QELYHFMGCSTFSQYTVVLEISLCKVAEAAP 533 G+ G + L GC EI+ CK+ + P Sbjct: 154 YGSHHSAIFGYTKLLGDVPGCQAEYIRVPFAEINCCKLPDDIP 196 >SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe|chr 2|||Manual Length = 325 Score = 31.9 bits (69), Expect = 0.078 Identities = 14/46 (30%), Positives = 25/46 (54%) Frame = +3 Query: 96 LSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGVFPVVL 233 + I+ + + PK GE+ VKI A + +D +G P V+P ++ Sbjct: 23 IEIQSVPIPQPKNGELLVKIEAAAINPSDLMNATGGFPYTVYPRIV 68 >SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr 2|||Manual Length = 1250 Score = 27.1 bits (57), Expect = 2.2 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = +3 Query: 294 GDHVVPLY-VPQCNTCKFCLNPKTNLCQKVRSTQGQGVMPDGTRRFRCKGQEL 449 G HVV L V N C + KT KV + + P G+R++ C G L Sbjct: 1036 GKHVVRLLQVRDANGCAASIT-KTQPAAKVSVVEMASLAPLGSRQYYCVGDRL 1087 >SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 1502 Score = 26.2 bits (55), Expect = 3.9 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = +3 Query: 507 LCKVAEAAPLDKVCLLGCGVPTGY 578 +CKV E A L CLL C T + Sbjct: 979 ICKVREIASLSLTCLLDCSKMTTF 1002 >SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr 3|||Manual Length = 1024 Score = 25.8 bits (54), Expect = 5.1 Identities = 13/47 (27%), Positives = 24/47 (51%) Frame = -1 Query: 624 RNLILVQLWQYSRRLHNL*VHRIPANKLYLMEQPLQLYREKFLEQLC 484 R+L V + R H L +H++ K + +Q ++ R+ L+ LC Sbjct: 210 RDLDAVACHERIARYHILCIHQLCEKKQFSAQQEVEQLRKGILQSLC 256 >SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schizosaccharomyces pombe|chr 1|||Manual Length = 666 Score = 25.4 bits (53), Expect = 6.8 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Frame = +3 Query: 57 KCLAAVAWEAGKPL-SIEEIEVDPPKAGEVRVKITATG 167 K ++ +AWE KPL + E+I D +GE+ V T +G Sbjct: 63 KVISCIAWEQ-KPLYASEQITTDISGSGEILVLGTNSG 99 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,640,799 Number of Sequences: 5004 Number of extensions: 53305 Number of successful extensions: 137 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 132 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 136 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 277683324 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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