Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10l09f
(627 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d... 258 4e-70
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase... 258 5e-70
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo... 58 1e-09
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p... 39 7e-04
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ... 36 0.006
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe... 32 0.078
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 27 2.2
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 26 3.9
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 26 5.1
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 25 6.8
>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 258 bits (633), Expect = 4e-70
Identities = 114/196 (58%), Positives = 141/196 (71%)
Frame = +3
Query: 39 TVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGV 218
T GK+I C AAVAW+ PLSIE ++V PP+ EVR+KI +GVCHTDAYTLSGKDPEG+
Sbjct: 6 TAGKIINCKAAVAWQPAAPLSIENVQVFPPRVHEVRIKIVNSGVCHTDAYTLSGKDPEGL 65
Query: 219 FPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFCLNPKTNLCQKVRSTQGQ 398
FPV+L T+V+ GD V+ LY P+C TCKFC + KTNLC ++R+TQG+
Sbjct: 66 FPVILGHEGAGIVESVGPQVTTVQVGDPVIALYTPECKTCKFCKSGKTNLCGRIRTTQGK 125
Query: 399 GVMPDGTRRFRCKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPTGY 578
G+MPDGT RF C G L HFMGCSTFS+YTVV +IS+ + APLD VCLLGCG+ TGY
Sbjct: 126 GLMPDGTSRFSCNGNTLLHFMGCSTFSEYTVVADISVVAIERLAPLDSVCLLGCGITTGY 185
Query: 579 GAALNTAKVEPGSNCA 626
GAA TA ++ G + A
Sbjct: 186 GAATITADIKEGDSVA 201
>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 258 bits (632), Expect = 5e-70
Identities = 117/198 (59%), Positives = 143/198 (72%)
Frame = +3
Query: 33 MSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPE 212
MS GK I C AAVAW A +PLSIE+I+V PPKA EVRVK+ + VCHTDAYTLSG DPE
Sbjct: 1 MSFEGKTITCKAAVAWGAKEPLSIEDIQVAPPKAHEVRVKVDWSAVCHTDAYTLSGVDPE 60
Query: 213 GVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFCLNPKTNLCQKVRSTQ 392
G FP+VL +V+PGDHV+ LY P+C CKFC + KTNLC K+R TQ
Sbjct: 61 GAFPIVLGHEGAGIVESIGEGVINVRPGDHVILLYTPECKECKFCRSGKTNLCSKIRETQ 120
Query: 393 GQGVMPDGTRRFRCKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPT 572
G+G+MPDGT RF C+ + L H+MGCS+FSQYTVV +ISL ++ +APL +CLLGCGV T
Sbjct: 121 GRGLMPDGTSRFSCRDKTLLHYMGCSSFSQYTVVADISLVAISHSAPLRSICLLGCGVTT 180
Query: 573 GYGAALNTAKVEPGSNCA 626
G+GA ++AKVE GS A
Sbjct: 181 GFGAVTHSAKVESGSTVA 198
>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
Adh1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 350
Score = 57.6 bits (133), Expect = 1e-09
Identities = 42/130 (32%), Positives = 56/130 (43%), Gaps = 4/130 (3%)
Frame = +3
Query: 57 KCLAAVAWEAGKPLSI--EEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDP-EGVFPV 227
K LAAV G P ++ EE+ V P EV V I TGVCHTD + L G P P+
Sbjct: 6 KQLAAVFHTHGGPENVKFEEVPVAEPGQDEVLVNIKYTGVCHTDLHALQGDWPLPAKMPL 65
Query: 228 VLXXXXXXXXXXXXXXXTSVKPGDHV-VPLYVPQCNTCKFCLNPKTNLCQKVRSTQGQGV 404
+ T +K GD V V C C++C+ + +C + Q G
Sbjct: 66 IGGHEGAGVVVKVGAGVTRLKIGDRVGVKWMNSSCGNCEYCMKAEETICPHI---QLSGY 122
Query: 405 MPDGTRRFRC 434
DGT + C
Sbjct: 123 TVDGTFQHYC 132
>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 360
Score = 38.7 bits (86), Expect = 7e-04
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +3
Query: 138 EVRVKITATGVCHTDA-YTLSGKDPEGVF--PVVLXXXXXXXXXXXXXXXTSVKPGDHVV 308
+V+V I ATG+C +D Y G + + P++L +S+KPGD V
Sbjct: 31 QVKVAIKATGICGSDVHYWKEGGIGDFILKKPMILGHESAGVVVEVGKGVSSLKPGDPVA 90
Query: 309 PLYVPQCNTCKFCLNPKTNLC 371
C C +C + + NLC
Sbjct: 91 VEPGCVCRLCDYCRSGRYNLC 111
>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 35.5 bits (78), Expect = 0.006
Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 6/163 (3%)
Frame = +3
Query: 63 LAAVAWEAGKPLSIEEIEVDPPKAG---EVRVKITATGVCH-TDAYTLSGKDPEGVFPVV 230
+ A W+ PL+++ EV P +V VK TA +C +D++ SG+ P +
Sbjct: 37 MKACVWDG--PLNVKIAEVPKPTITHPKDVIVKTTACTICSGSDSHIFSGEMPGIEKGAI 94
Query: 231 LXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFCLNPKTNLCQKVRSTQGQGVMP 410
L +++ GD VV + C C FC + C ++ V
Sbjct: 95 LGHESCGIVAEKGDEVNNLEIGDRVVIAFDLACGQCSFCKRHEYAACDTTNDSKLMDV-N 153
Query: 411 DGTRRFRCKG--QELYHFMGCSTFSQYTVVLEISLCKVAEAAP 533
G+ G + L GC EI+ CK+ + P
Sbjct: 154 YGSHHSAIFGYTKLLGDVPGCQAEYIRVPFAEINCCKLPDDIP 196
>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 325
Score = 31.9 bits (69), Expect = 0.078
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 96 LSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGVFPVVL 233
+ I+ + + PK GE+ VKI A + +D +G P V+P ++
Sbjct: 23 IEIQSVPIPQPKNGELLVKIEAAAINPSDLMNATGGFPYTVYPRIV 68
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 27.1 bits (57), Expect = 2.2
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 294 GDHVVPLY-VPQCNTCKFCLNPKTNLCQKVRSTQGQGVMPDGTRRFRCKGQEL 449
G HVV L V N C + KT KV + + P G+R++ C G L
Sbjct: 1036 GKHVVRLLQVRDANGCAASIT-KTQPAAKVSVVEMASLAPLGSRQYYCVGDRL 1087
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 507 LCKVAEAAPLDKVCLLGCGVPTGY 578
+CKV E A L CLL C T +
Sbjct: 979 ICKVREIASLSLTCLLDCSKMTTF 1002
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = -1
Query: 624 RNLILVQLWQYSRRLHNL*VHRIPANKLYLMEQPLQLYREKFLEQLC 484
R+L V + R H L +H++ K + +Q ++ R+ L+ LC
Sbjct: 210 RDLDAVACHERIARYHILCIHQLCEKKQFSAQQEVEQLRKGILQSLC 256
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 25.4 bits (53), Expect = 6.8
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 57 KCLAAVAWEAGKPL-SIEEIEVDPPKAGEVRVKITATG 167
K ++ +AWE KPL + E+I D +GE+ V T +G
Sbjct: 63 KVISCIAWEQ-KPLYASEQITTDISGSGEILVLGTNSG 99
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,640,799
Number of Sequences: 5004
Number of extensions: 53305
Number of successful extensions: 137
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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