Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l09f
         (627 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)             104   5e-23
SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   3e-05
SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)            36   0.020
SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.027
SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_37040| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_25818| Best HMM Match : Pkinase (HMM E-Value=1.7e-20)               29   3.1  
SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)                  29   4.1  
SB_46556| Best HMM Match : CDtoxinA (HMM E-Value=1.1)                  28   5.4  
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.4  
SB_37880| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_30755| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)                  27   9.4  
SB_19564| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score =  104 bits (250), Expect = 5e-23
 Identities = 51/80 (63%), Positives = 54/80 (67%)
 Frame = +3

Query: 54  IKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGVFPVVL 233
           I C AAVAWE  KPLSIE IEV PPKA EVR+KI ATGVCHTDAYTLSG DPEG+FP +L
Sbjct: 2   ITCQAAVAWEPKKPLSIETIEVAPPKAHEVRIKILATGVCHTDAYTLSGVDPEGLFPCIL 61

Query: 234 XXXXXXXXXXXXXXXTSVKP 293
                          T VKP
Sbjct: 62  GHEGGGIVESVGEGVTKVKP 81


>SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 29/93 (31%), Positives = 39/93 (41%)
 Frame = +3

Query: 138 EVRVKITATGVCHTDAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLY 317
           EV VK+  +G+C  D   L G+ P     VVL                +V  GD VV   
Sbjct: 75  EVIVKVAYSGICDRDLQILEGELPAAKC-VVLGHEFSGVVSDVGSDVKNVSIGDRVVVNP 133

Query: 318 VPQCNTCKFCLNPKTNLCQKVRSTQGQGVMPDG 416
              CNTCK C   + + C+K  +    GV  +G
Sbjct: 134 NSSCNTCKACRRGQPHFCEKGGTGSAIGVWKNG 166


>SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)
          Length = 303

 Score = 36.3 bits (80), Expect = 0.020
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
 Frame = +3

Query: 117 VDPPKAGEVRVKITATGVCHTDA-YTLSGKDPEGVF--PVVLXXXXXXXXXXXXXXXTSV 287
           +D  +  +V++ +   G+C +D  Y   G   + V   P+VL               + +
Sbjct: 14  IDDLRLVQVQISMHTVGICGSDVHYWKHGCIGDFVLTAPMVLGHESSGVICAVGEGVSDL 73

Query: 288 KPGDHVVPLYVPQCNTCKFCLNPKTNLCQKV 380
           K GD V       C TC +C   + NLC K+
Sbjct: 74  KEGDRVAIEPGTPCRTCSYCKKGRYNLCAKM 104


>SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 348

 Score = 35.9 bits (79), Expect = 0.027
 Identities = 24/93 (25%), Positives = 37/93 (39%)
 Frame = +3

Query: 138 EVRVKITATGVCHTDAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLY 317
           +V VKI  + V  TD + L G+  +    ++L                 V  GD VV   
Sbjct: 27  DVVVKIAYSAVSGTDLHVLEGRI-DCAKSIILGHQFVGIVKEIGADVQHVSVGDRVVINP 85

Query: 318 VPQCNTCKFCLNPKTNLCQKVRSTQGQGVMPDG 416
           +  C  C FCL  + +LC+        G+  +G
Sbjct: 86  LTSCGICDFCLKGQPHLCKVEGKNTAIGIKRNG 118


>SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 562

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +3

Query: 75  AWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTL 194
           AW  G  L ++   V P  A  +  +IT TG   T AYTL
Sbjct: 361 AWSFGLKLGLKSQNVGPGPAYLIPARITRTGTDGTPAYTL 400


>SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 21/66 (31%), Positives = 32/66 (48%)
 Frame = +1

Query: 10   IGSCPVQSCQQSVK*LSAWPQSRGKQASRCPSRRLKWTRQKPVKCALRSRPPESAILTRI 189
            +GS P +S +  +K    +P+ R + +S   S  L     K  K     R  E+AIL R 
Sbjct: 987  VGSGP-ESIKMRIKGSRKFPKMRRQLSSTTTSAEL--IEHKQSKTTPSGRKLETAILRRA 1043

Query: 190  HSPEKI 207
            HSP+ +
Sbjct: 1044 HSPQTV 1049


>SB_37040| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +1

Query: 40  QSVK*LSAWPQSRGKQASRCPSRRLKWTRQKPVKCALRSRPPESAILTRIH 192
           QS   L+  P +RG Q +    R  KW  + P KC ++ +  E A++ R+H
Sbjct: 3   QSGNALTPLPHTRGIQTNTLLLR--KWAVEAPSKCRMKGQTKE-AVVQRVH 50


>SB_25818| Best HMM Match : Pkinase (HMM E-Value=1.7e-20)
          Length = 956

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/75 (20%), Positives = 35/75 (46%)
 Frame = +1

Query: 67  PQSRGKQASRCPSRRLKWTRQKPVKCALRSRPPESAILTRIHSPEKILRECFL*YWDMKA 246
           P+SR  +  R  S   +    + V C  +     +A+L ++   + + R+C   YWD   
Sbjct: 462 PESRDPEVIRAQSDAERSRLLEDVSCMEQFGEKWAAVLDKVLPTKPVFRKC---YWDDSE 518

Query: 247 AESWRVSVRESLQSS 291
             ++ + +R +++ +
Sbjct: 519 GRAFEIHLRRAIKGT 533


>SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)
          Length = 1281

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 37  QQSVK*LSAWPQSRGKQASRCPSRRLKWTRQKPV-KCALRSRPPESAILTRIHSPE 201
           Q S K  ++ PQ + KQASR     LK    KP  +    SRP ++++ T+   P+
Sbjct: 52  QASRKTKTSKPQDQDKQASRPRQASLKTKTSKPQDQDKQASRPRQASLKTKTSKPQ 107


>SB_46556| Best HMM Match : CDtoxinA (HMM E-Value=1.1)
          Length = 208

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
 Frame = -2

Query: 494 NNCVLTEC*TTHEMVEFLSFTAES----PSAIWHHTLTLSRTNLLAQISFRIQAEFTCVA 327
           + CV +   T HE V F S T        S   H  +T     L   ++FR      CV 
Sbjct: 52  HECVTSRSITLHECVTFRSITLHERMTFRSITLHECVTFRSITLHECVTFRSITLHECVT 111

Query: 326 LWDV 315
            W +
Sbjct: 112 FWSI 115



 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
 Frame = -2

Query: 494 NNCVLTEC*TTHEMVEFLSFTAES----PSAIWHHTLTLSRTNLLAQISFRIQAEFTCVA 327
           + CV     T HE V F S T        S   H  +T     L  +++FR      CV 
Sbjct: 107 HECVTFWSITLHECVTFWSITLHECVTFRSITLHECVTFRNITLHERVTFRSITLHECVT 166

Query: 326 LWDV 315
            W +
Sbjct: 167 FWSI 170


>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = +3

Query: 408  PDGTRRFRCKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKVCL-LG----CGVPT 572
            PDG  R++C     Y    C+T+        I+ C  + A P D+VC+  G    CG P 
Sbjct: 878  PDG--RYKCTCTSRYKDENCTTY--------INECANSSACPADRVCINYGGGYLCGCPA 927

Query: 573  GY 578
            G+
Sbjct: 928  GF 929


>SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1298

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = -3

Query: 457  KW*SSCPLQRNRLVPSGITP*P*VERTFWHKLVFGFKQNLHVLHCGTYRGTTWSPGLTEV 278
            +W     +  + LV   I P P +       L FG+  NL+    GTY   TW P +  V
Sbjct: 1070 RWLDKGTISASELVAGCILPLPYLSYRLLRHL-FGYSHNLN----GTYTDATWKPSVERV 1124


>SB_37880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 163 VAVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLPTVDMTALDN 17
           V+V     S + G  +S SS    +P+S  +      T+PT DM A  N
Sbjct: 3   VSVAENTPSSSSGDPSSHSSQSQSVPSSMDSGGSTAATVPTQDMVAFAN 51


>SB_30755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 906

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
 Frame = -3

Query: 625 AQFDPGSTLAVFKAAP*PVGTPHPSKQT--LSNGAASATLQREISRT 491
           ++ +PGST ++  ++  P  +P+P+K +  L  G +S+T+ + +S T
Sbjct: 446 SEVEPGSTSSITGSSKYPPVSPNPAKPSNILFEGPSSSTVFKSLSPT 492


>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
          Length = 765

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 67  PQSRGKQASRCPSRRLKWTRQKPVKCALRSRPPESAILTRIHSPEKI 207
           P+ R +  SR P R    +  +  +   RSR P+S + +R  SP +I
Sbjct: 295 PRKRRRSKSRSPRRYRDSSSCRRRRSRSRSRSPKSRLRSRSRSPYRI 341


>SB_19564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 790

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 193 SVYASVWQTPVAVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLP 44
           S  AS  ++PV  +++R   + G S  ++   SG P   A   +  I +P
Sbjct: 321 SASASCSKSPVRPMVSRRIASAGSSQGVTPRQSGTPTQGAQPKRRSIAMP 370


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,909,570
Number of Sequences: 59808
Number of extensions: 453542
Number of successful extensions: 1121
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)