Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10l08r
(740 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.92
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch... 28 1.6
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 27 3.7
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni... 26 4.9
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 26 6.5
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 6.5
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 26 6.5
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 26 6.5
SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2... 25 8.6
>SPAC2F3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 28.7 bits (61), Expect = 0.92
Identities = 18/48 (37%), Positives = 29/48 (60%)
Frame = +3
Query: 156 SDKSVVQNEYVILVLGLSS*SYWRHVTAFLHIFQPS*HMITHCDFNPT 299
+D+S++ EYVI +L +S S R + L +F+ H+I H D NP+
Sbjct: 9 NDRSII--EYVIKILLISGIS--RIIILILAMFESIRHIIFHNDTNPS 52
>SPBC32H8.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 679 NIPNKERKHGSCLN*WNS 626
NIP+ E K GSC+N W S
Sbjct: 413 NIPDYETKPGSCINEWAS 430
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 314 DDSDKRWVEITMCYHVLRGLKNMKESGDMP-PIT 216
D D W+ + +C + + L +KE D+P PIT
Sbjct: 102 DSQDSSWINVRVCVNCRQQLSELKEL-DLPYPIT 134
>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 4.9
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Frame = -1
Query: 329 VGVIFDDSDKRWVEITMCYHVLRGLKNMKESG------DMPPITLGAQPQYQDNIF 180
+ I DD K W+E +V + K +K SG + PI+ +PQ +F
Sbjct: 47 LNTIDDDDKKSWIEWIYKNYVTKESKGIKYSGFQAYRTGIQPISFEQEPQLAGTVF 102
>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2
Query: 200 GVELLKLLEACHRFP 244
G EL LL CHRFP
Sbjct: 283 GGELFSLLRKCHRFP 297
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.8 bits (54), Expect = 6.5
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
Frame = -1
Query: 614 WPSFIKYVKNWMFSNFIIRPYFDQEFSLNEFIEASK-HAVQIV--------SGALQNSDF 462
W I+ + + + FI+R + DQ L E + S HA +V S +S +
Sbjct: 564 WHLIIERILGNVINGFIVRSHHDQ-LILKELMRQSNCHATVVVGKYDPFDYSSGEPDSQY 622
Query: 461 KTLEGLVDKDAINALKTAVSQLSVSQRQLLAIEKE 357
T+ ++ D L T ++ L + + L+ +E
Sbjct: 623 PTVLKIIKFDDDEVLHTLINHLGIEKMLLIEDRRE 657
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/38 (36%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = -1
Query: 503 AVQIVSGALQNSDFKTLEGLVDK-DAINALKTAVSQLS 393
+V++ +G +NS F+T+E L++ D N+ T +SQL+
Sbjct: 664 SVKVKNGDYENSSFETIENLIESFDYENS--TPLSQLT 699
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.8 bits (54), Expect = 6.5
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Frame = -1
Query: 662 TETRKLPQLMEFPPIMWPSFIKYVKNWMFSNFIIRPYFDQEFSLNEFIEASKHAVQI--- 492
TE + + + ++P + + +K+ + ++ +RP DQ S F E H+ I
Sbjct: 233 TEQKIINECPQYPETLSKNSSSLLKSLLCKDYRLRPSIDQIISHPYFKENGYHSSSIRDP 292
Query: 491 -VSGALQNSDFKTLEGL-VDKDAINA 420
S + K LE + VD D +NA
Sbjct: 293 RPSSKAEEKVRKRLEFVGVDMDQLNA 318
>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 497 QIVSGALQNSDFKTLEGLVDKDAINALKTAVSQLSVSQRQLLAI 366
QIV L ++ K L +DK NAL V+Q+ L A+
Sbjct: 316 QIVGDDLTVTNVKRLRTAIDKKCANALLLKVNQIGSVTESLNAV 359
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,121,121
Number of Sequences: 5004
Number of extensions: 67705
Number of successful extensions: 181
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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