Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l08r
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0624 + 4651995-4654715                                           30   2.2  
02_05_0767 + 31609773-31610174,31610409-31610501,31610608-316106...    29   2.9  
03_06_0531 + 34552206-34552598,34552665-34552735,34553363-345533...    29   3.9  
05_05_0133 + 22614219-22614651,22614767-22615671,22615918-226162...    29   5.1  
07_01_0042 - 334417-334431,334563-334688,334852-335136,335220-33...    28   6.8  

>07_01_0624 + 4651995-4654715
          Length = 906

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -1

Query: 479 LQNSDFKTLEGLVDKDAINALKTAVSQLSVSQRQLLAIEKEDIFYAFPYQVG 324
           L  SDF  L+  + + A++     V +  + Q +L A E EDI   + Y VG
Sbjct: 45  LLQSDFSMLQAFIAQVAVDRSNDMVLEAWMEQVRLAAHEAEDIVDEYTYLVG 96


>02_05_0767 +
           31609773-31610174,31610409-31610501,31610608-31610668,
           31610797-31610865,31611274-31611440
          Length = 263

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = -1

Query: 356 DIFYAFPYQVGVIFDDSDKRWVEITM---CYHVLRGL-KNMKESGDMPPITLGAQ 204
           ++ Y   +  G++FD + KR   +TM      +LRGL + +   G +PP+ +G +
Sbjct: 134 NVHYTARFTDGIVFDSTYKRGRPLTMRLGAGKILRGLEQGISGGGGVPPMLVGGK 188


>03_06_0531 +
           34552206-34552598,34552665-34552735,34553363-34553369,
           34553603-34553736,34553834-34554245,34554655-34554753,
           34555059-34555283,34555652-34556029,34556412-34556555,
           34556832-34556927,34557228-34557547,34557965-34558040
          Length = 784

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -1

Query: 410 AVSQLSVSQRQLLAIEKEDIFYAFPYQVGVIFDDSD 303
           A+++L + ++ +  +EK  I + FP QV V+  DS+
Sbjct: 105 AIARLGLPEQLVSTLEKRGITHLFPIQVSVLGGDSE 140


>05_05_0133 +
           22614219-22614651,22614767-22615671,22615918-22616224,
           22616307-22616380
          Length = 572

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 188 YPGTGVELLKLLEACHRFPSYFSALLTHD 274
           +PG G ELL L+ AC +  S+F +   H+
Sbjct: 317 FPGQGGELLDLVIACSQLTSFFQSKGCHE 345


>07_01_0042 -
           334417-334431,334563-334688,334852-335136,335220-335368,
           336239-336536,337030-337131,337245-337613,337973-338115,
           338334-338518,339246-339475,339734-339821,340158-340253,
           340397-340512,340604-340852,340950-341175,341411-341622
          Length = 962

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/28 (35%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = +1

Query: 4   LFYTTI-IFVFIFKNPVISL*YNFYIFL 84
           ++YT++ I+ +IF  PV+SL +  Y+++
Sbjct: 845 MYYTSVFIYFWIFSTPVVSLIFGSYLYI 872


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,041,646
Number of Sequences: 37544
Number of extensions: 357325
Number of successful extensions: 763
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)