Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l08r
         (740 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         26   1.4  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    25   3.2  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            24   5.7  
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    23   9.9  
AJ438610-11|CAD27483.1|  765|Anopheles gambiae hypothetical prot...    23   9.9  
AF444780-1|AAL37901.1| 1152|Anopheles gambiae Toll protein.            23   9.9  

>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 17/57 (29%), Positives = 23/57 (40%)
 Frame = -1

Query: 320  IFDDSDKRWVEITMCYHVLRGLKNMKESGDMPPITLGAQPQYQDNIFILNYRFIREF 150
            ++D S+K    I      + G  N  +SGD P        Q QD +  L  R   EF
Sbjct: 1345 LYDGSEKPKNAIEPSQEAVSGTDNANDSGDKPGSRNRTITQSQDTVVNLGGRLKIEF 1401


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 42   KSSYQSIIQFLHFLNKHMRLKMINNVNPPTV--FNSFSELSDK 164
            K S +S+ + L   N+H  LK  N+VN   +  F SFSE  +K
Sbjct: 958  KMSLKSLFKELEKANQH--LKKYNHVNKKALDQFLSFSEQKEK 998


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 81   LNKHMRLKMINNVNPPTVFNSFSELSDKSVV-QNEYVI 191
            LN H+R  M++  N P VF+ ++ +   +V+ Q  Y +
Sbjct: 932  LNIHVRFFMLSLENKPHVFDCYTTVIPHTVLTQYNYTV 969


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
           protein.
          Length = 1645

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 275 YHVLRGLKNMKESGDMPPI 219
           +HV  GLK +KE   M P+
Sbjct: 590 FHVDSGLKTLKEEEPMTPL 608


>AJ438610-11|CAD27483.1|  765|Anopheles gambiae hypothetical protein
           protein.
          Length = 765

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 275 YHVLRGLKNMKESGDMPPI 219
           +HV  GLK +KE   M P+
Sbjct: 591 FHVDSGLKTLKEEEPMTPL 609


>AF444780-1|AAL37901.1| 1152|Anopheles gambiae Toll protein.
          Length = 1152

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 302 YPNHQKLLQLDKEMHKIYLLFLWL 373
           +P+HQ +LQL   +    +  LWL
Sbjct: 115 FPHHQSILQLVSFLGTTQVKVLWL 138


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 767,954
Number of Sequences: 2352
Number of extensions: 16547
Number of successful extensions: 23
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76091949
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)