Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l08r
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132865-19|CAJ76951.1|  220|Caenorhabditis elegans Hypothetical...    33   0.21 
Z81109-17|CAB03241.2|  497|Caenorhabditis elegans Hypothetical p...    31   0.65 
Z81476-4|CAB03923.1|  707|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z46934-1|CAA87039.1|  226|Caenorhabditis elegans Hypothetical pr...    28   8.0  
AF016679-2|AAB66159.1|  658|Caenorhabditis elegans Hypothetical ...    28   8.0  

>AL132865-19|CAJ76951.1|  220|Caenorhabditis elegans Hypothetical
           protein Y62E10A.20 protein.
          Length = 220

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
 Frame = -1

Query: 638 LMEFPPIMWPSF--IKYVKNWMFSNFIIRPYFDQEFSLNEFIEASKHAVQIVSGALQNSD 465
           + + P +  P+F   + V N    +F    Y ++ F++   +  +   +  +S  L +  
Sbjct: 39  VFDTPQVSVPTFELSRRVGNLFAQSFYTLCY-EKSFTVESLVHGANKGIHSLSHFLADEK 97

Query: 464 FKTLEGLVDKDAINALKTAVSQLSVSQRQLLAIEKEDIFYAF 339
           +  +E L  KDA+  ++ A   LS      L    +DI  +F
Sbjct: 98  WDQMENLAVKDAVENMREARKGLSKQLENALRFSPDDILLSF 139


>Z81109-17|CAB03241.2|  497|Caenorhabditis elegans Hypothetical
           protein R10D12.10 protein.
          Length = 497

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 22/114 (19%), Positives = 50/114 (43%), Gaps = 8/114 (7%)
 Frame = -1

Query: 443 VDKDAINALKTAVSQLSVSQRQLLAIEKEDIFYAFPYQVGVIFDDSDKRWVEIT---MCY 273
           ++KD + AL+ +     + ++ L+   +  +       +G+I    D ++ + T   +  
Sbjct: 69  IEKDVLEALRDSPHSAHIIEQLLIGDYRFTVMTLSGPTLGIIKHIMDNKFSDSTILRLSM 128

Query: 272 HVLRGLKNMKESG----DMPPITLGAQP-QYQDNIFILNYRFIREFTKGVEDSW 126
             L  +K++ E G    D+ P  +   P +   NI +L++   R+F +     W
Sbjct: 129 RTLMAIKDLHEHGFIHRDLEPFNIALSPYKSSRNILLLDFGEARQFARNDNGKW 182


>Z81476-4|CAB03923.1|  707|Caenorhabditis elegans Hypothetical
           protein C25F9.5 protein.
          Length = 707

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/74 (24%), Positives = 32/74 (43%)
 Frame = -1

Query: 737 NNVQKQIAITSKCPIIQYRKYSEQGTETRKLPQLMEFPPIMWPSFIKYVKNWMFSNFIIR 558
           NN+++++ + S      Y        +  K     +F   MW S + Y K + + NF I 
Sbjct: 399 NNIEQKLHLLSTTKY--YFTLMTSAIKASKANDCCQFSNDMWESIVSYTKEFFYKNFEI- 455

Query: 557 PYFDQEFSLNEFIE 516
            +  ++ SL E  E
Sbjct: 456 -WLKEDESLEEMYE 468


>Z46934-1|CAA87039.1|  226|Caenorhabditis elegans Hypothetical
           protein ZK1320.1 protein.
          Length = 226

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -1

Query: 356 DIFYAFPYQVGVIFDDSDKRWVEITMCYHVLRGLKNMKESGDMPPITLGAQ 204
           D+   + Y    +F   + +W  +T+ Y        MKESG+ PP  L A+
Sbjct: 12  DVISPYSYIAFEVFQKLETQWKGVTIRYIPFFLGAVMKESGNRPPAMLPAR 62


>AF016679-2|AAB66159.1|  658|Caenorhabditis elegans Hypothetical
           protein T28C12.4a protein.
          Length = 658

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 181 NMLSWYWG*APKVIGGMSPLSFIFFSP 261
           N+ +WY+   P+  GG SPL F  FSP
Sbjct: 10  NLPAWYYLKGPR-FGGESPLPFCQFSP 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,952,354
Number of Sequences: 27780
Number of extensions: 367424
Number of successful extensions: 922
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)