Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l08r
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.7  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.3  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.3  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   5.3  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   7.0  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   7.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.2  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -1

Query: 719 IAITSKCPIIQYRKYSEQGTE 657
           + +   CP  +YR Y++ G+E
Sbjct: 258 VCVAQACPTPEYRWYAQTGSE 278


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -1

Query: 719 IAITSKCPIIQYRKYSEQGTE 657
           + +   CP  +YR Y++ G+E
Sbjct: 258 VCVAQACPTPEYRWYAQTGSE 278


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/34 (26%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 302 YPNHQKLLQLDKEMHKIYLLFLW-LTIAAGTQKV 400
           Y +H KL+++ +++   Y +  W L + +G  K+
Sbjct: 524 YDSHHKLIEIPEDLKYFYEIDNWMLDLNSGLNKI 557


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/34 (26%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 302 YPNHQKLLQLDKEMHKIYLLFLW-LTIAAGTQKV 400
           Y +H KL+++ +++   Y +  W L + +G  K+
Sbjct: 524 YDSHHKLIEIPEDLKYFYEIDNWMLDLNSGLNKI 557


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 105 MINNVNPPTVFNSFSELSDKSVVQN 179
           M+N+VN   + +SFS   DK V  N
Sbjct: 6   MLNDVNISAILDSFSVSYDKRVRPN 30


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 105 MINNVNPPTVFNSFSELSDKSVVQN 179
           M+N+VN   + +SFS   DK V  N
Sbjct: 6   MLNDVNISAILDSFSVSYDKRVRPN 30


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 34  IFKNPVISL*YNFYIFLISI 93
           I KNP +    N+Y+F ++I
Sbjct: 65  IIKNPAMQTATNYYLFSLAI 84


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = +3

Query: 339 KCIKYIFFF 365
           KC++Y+FFF
Sbjct: 397 KCLEYLFFF 405


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = +3

Query: 339 KCIKYIFFF 365
           KC++Y+FFF
Sbjct: 397 KCLEYLFFF 405


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 300 LIRIIKNYSNLIRKCIK 350
           L+R + N S+++R CIK
Sbjct: 43  LVRPVVNTSDVLRVCIK 59


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 300 LIRIIKNYSNLIRKCIK 350
           L+R + N S+++R CIK
Sbjct: 43  LVRPVVNTSDVLRVCIK 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,570
Number of Sequences: 438
Number of extensions: 4498
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)