Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l08r
         (740 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09230.1 68416.m01097 myb family transcription factor identic...    31   1.1  
At2g18810.1 68415.m02189 hypothetical protein contains Pfam prof...    30   1.9  
At2g36070.1 68415.m04429 mitochondrial import inner membrane tra...    29   4.3  
At4g15230.1 68417.m02333 ABC transporter family protein similar ...    28   7.5  
At3g24550.1 68416.m03083 protein kinase family protein contains ...    28   7.5  
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden...    27   9.9  
At3g24220.1 68416.m03039 9-cis-epoxycarotenoid dioxygenase, puta...    27   9.9  

>At3g09230.1 68416.m01097 myb family transcription factor identical
           to transforming protein (myb) homolog GB:S22520
           [Arabidopsis thaliana]
          Length = 393

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +3

Query: 87  KHMRLKMINNVNPPTVFNSFSELSDKSVV 173
           K  RL+  N +NP  + NSF+E+ D++++
Sbjct: 91  KSCRLRWCNQLNPNLIRNSFTEVEDQAII 119


>At2g18810.1 68415.m02189 hypothetical protein contains Pfam profile
           PF03754: Domain of unknown function (DUF313)
          Length = 234

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +1

Query: 385 WDTES*DTAVFSALIASLSTKPSRVLKSLFCSAPETI*TACLEASMNSFRLNS 543
           W   S D   F+ +++     P++  + L   A  T+ TACLEAS ++  ++S
Sbjct: 169 WSFHSPDMLFFALVLSDPDLAPTKDWECLNLLAKLTVETACLEASQDADTMSS 221


>At2g36070.1 68415.m04429 mitochondrial import inner membrane
           translocase subunit TIM44, putative contains similarity
           to Swiss-Prot:O35857 import inner membrane translocase
           subunit TIM44, mitochondrial precursor [Mus musculus];
           contains Pfam domian PF04280: Mitochondrial import inner
           membrane, translocase subunit TIM44
          Length = 469

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 548 DQEFSLNEFIEASKHAVQIVSGALQNSDFKTLEGLVDKDAI 426
           D  FSL +F+   + A++ V  A    D KTL+    K+ I
Sbjct: 321 DPSFSLPDFVSEIQEAIRPVLNAYSKGDAKTLKKYCSKELI 361


>At4g15230.1 68417.m02333 ABC transporter family protein similar to
            pleiotropic drug resistance like protein [Nicotiana
            tabacum] GI:20522008, PDR5-like ABC transporter
            [Spirodela polyrhiza] GI:1514643; contains Pfam profile
            PF00005: ABC transporter
          Length = 1326

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 22/68 (32%), Positives = 35/68 (51%)
 Frame = -1

Query: 437  KDAINALKTAVSQLSVSQRQLLAIEKEDIFYAFPYQVGVIFDDSDKRWVEITMCYHVLRG 258
            KD++  L   +S LS+ QR+ L I  E +  A P    +IF D     ++      V+R 
Sbjct: 866  KDSVVGLP-GISGLSIEQRKRLTIAVELV--ANP---SIIFMDEPTTGLDARAAAIVMRA 919

Query: 257  LKNMKESG 234
            +KN+ E+G
Sbjct: 920  VKNVAETG 927


>At3g24550.1 68416.m03083 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 652

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 130 VGGLTLLIIFSLICLLRKCK 71
           +GG+ +L+I +LICLL K K
Sbjct: 146 IGGVAILVILTLICLLCKKK 165


>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
           identical to RNA helicase [Arabidopsis thaliana]
           GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain, PF00098: Zinc knuckle
          Length = 747

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -1

Query: 434 DAINALKTAVSQLSVSQRQLLAIEKEDIFYAFPYQVGVI 318
           +A +  + A+S+LS+ QR   ++EK  I + FP Q  V+
Sbjct: 95  EADDGEELAISKLSLPQRLEESLEKRGITHLFPIQRAVL 133


>At3g24220.1 68416.m03039 9-cis-epoxycarotenoid dioxygenase,
           putative / neoxanthin cleavage enzyme, putative /
           carotenoid cleavage dioxygenase, putative similar to
           GB:CAB10168 from [Lycopersicon esculentum] (J. Exp. Bot.
           47, 2111-2112 (1997)); similar to 9-cis-epoxycarotenoid
           dioxygenase [Phaseolus vulgaris][GI:6715257]
          Length = 577

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -1

Query: 308 SDKRWVEIT--MCYHVLRGLKNMKESGDMPPITLGAQPQYQDNIF 180
           SD  WV++    C+H+    +   E GD   + +G+     D IF
Sbjct: 376 SDINWVDVPDCFCFHLWNAWEERTEEGDPVIVVIGSCMSPPDTIF 420


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,480,163
Number of Sequences: 28952
Number of extensions: 322874
Number of successful extensions: 727
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)