Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l08f
         (615 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25407| Best HMM Match : BLYB (HMM E-Value=1.2)                      41   7e-04
SB_12896| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.1)            30   1.7  
SB_26129| Best HMM Match : RVT_1 (HMM E-Value=1.2e-27)                 29   4.0  
SB_16379| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)                29   4.0  
SB_11034| Best HMM Match : Securin (HMM E-Value=6.8)                   28   5.2  
SB_32519| Best HMM Match : Pkinase (HMM E-Value=7.3e-39)               28   6.9  
SB_20817| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_7494| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)                  27   9.1  

>SB_25407| Best HMM Match : BLYB (HMM E-Value=1.2)
          Length = 237

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 25/128 (19%), Positives = 62/128 (48%)
 Frame = +3

Query: 231 EQGTETRKLPQLMEFPPIMWPSFIKYVKNWMFSNFIIRPYFDQEFSLNEFIEASKHAVQI 410
           E+ ++   + ++ +F      SF+ +    +  + +++ YFD+EF   EF+  +K A+ +
Sbjct: 62  ERDSKDNPMGKIKDFATAASESFLTWCSLKIHLH-LLKTYFDREFEEEEFLRGAKKALTV 120

Query: 411 VSGALQNSDFKTLEGLVDKDAINALKTAVSQLSVSQRQLLAIEKEDIFYAFPYQVGVIFD 590
            S  L    +  ++ +   + +  +K AV           A+++ DI  A    + + ++
Sbjct: 121 TSEMLAEKRYADMQKISTSNFVELIKKAVETHDPGP----AVKESDIVTAELTNIELTYN 176

Query: 591 DSDKRWVE 614
           ++D+R +E
Sbjct: 177 ENDERQIE 184


>SB_12896| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.1)
          Length = 284

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 186 AITSKCPIIQYRKYSEQGTETRKLPQLMEFP 278
           A T + P   +R Y   G ETR++PQ +  P
Sbjct: 194 AYTGRIPYADHRGYRYHGPETRRMPQALHRP 224


>SB_26129| Best HMM Match : RVT_1 (HMM E-Value=1.2e-27)
          Length = 1036

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 19/52 (36%), Positives = 30/52 (57%)
 Frame = +3

Query: 393 KHAVQIVSGALQNSDFKTLEGLVDKDAINALKTAVSQLSVSQRQLLAIEKED 548
           +HA + V+ AL+    KTL  LVDK+ I  + T  S +S     ++A+ K+D
Sbjct: 451 QHAPRRVAVALRPQLKKTLNDLVDKEIIAPVTTPTSWIS----SMVAVPKKD 498


>SB_16379| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
          Length = 499

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 19/52 (36%), Positives = 30/52 (57%)
 Frame = +3

Query: 393 KHAVQIVSGALQNSDFKTLEGLVDKDAINALKTAVSQLSVSQRQLLAIEKED 548
           +HA + V+ AL+    KTL  LVDK+ I  + T  S +S     ++A+ K+D
Sbjct: 344 QHAPRRVAVALRPQLKKTLNDLVDKEIIAPVTTPTSWIS----SMVAVPKKD 391


>SB_11034| Best HMM Match : Securin (HMM E-Value=6.8)
          Length = 249

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +3

Query: 393 KHAVQIVSGALQNSDFKTLEGLVDKDAINALKTAVSQLS 509
           +HA + V+ AL+    KTL  LVDK+ I  + T  S +S
Sbjct: 69  QHAPRRVAAALRPQLKKTLNDLVDKEIIAPVTTPTSWIS 107


>SB_32519| Best HMM Match : Pkinase (HMM E-Value=7.3e-39)
          Length = 1486

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 450  EGLVDKDAINALKTAVSQLSVSQRQLL 530
            EGL ++DA+ A K+ VSQ  V +R+ L
Sbjct: 1431 EGLGERDALMARKSEVSQNGVDERECL 1457


>SB_20817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 632

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +3

Query: 393 KHAVQIVSGALQNSDFKTLEGLVDKDAINALKTAVSQLS 509
           +HA + V+ AL+    KTL  LVDK+ I  + T  S +S
Sbjct: 187 QHAPRRVAVALRTQLKKTLNDLVDKEIIAPVTTPTSWIS 225


>SB_7494| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
          Length = 960

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 22/69 (31%), Positives = 36/69 (52%)
 Frame = +3

Query: 303 KYVKNWMFSNFIIRPYFDQEFSLNEFIEASKHAVQIVSGALQNSDFKTLEGLVDKDAINA 482
           K VK  +FS+ + +   +    L+   +  +HA + V+ AL+    KTL  LVDK+ I  
Sbjct: 323 KLVKQ-VFSDGVGKLDGEYTIRLDTNAQPVQHAPRRVAVALRPQLKKTLNDLVDKEIIAP 381

Query: 483 LKTAVSQLS 509
           + T  S +S
Sbjct: 382 VTTPTSWIS 390


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,850,138
Number of Sequences: 59808
Number of extensions: 335279
Number of successful extensions: 768
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)