Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l08f
         (615 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81476-4|CAB03923.1|  707|Caenorhabditis elegans Hypothetical pr...    34   0.093
AL132865-19|CAJ76951.1|  220|Caenorhabditis elegans Hypothetical...    33   0.16 
AC024791-6|AAF60660.2|  782|Caenorhabditis elegans Human spg (sp...    29   3.5  
Z93396-5|CAB07714.1|  633|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U23519-8|AAK31503.3|  734|Caenorhabditis elegans Hypothetical pr...    27   8.1  
DQ645956-1|ABG36764.1|  624|Caenorhabditis elegans molting prote...    27   8.1  

>Z81476-4|CAB03923.1|  707|Caenorhabditis elegans Hypothetical
           protein C25F9.5 protein.
          Length = 707

 Score = 33.9 bits (74), Expect = 0.093
 Identities = 20/90 (22%), Positives = 39/90 (43%)
 Frame = +3

Query: 117 HVLTRQSLRLCDKIAYNNVQKQIAITSKCPIIQYRKYSEQGTETRKLPQLMEFPPIMWPS 296
           H L   + ++ + +  NN+++++ + S      Y        +  K     +F   MW S
Sbjct: 383 HFLKGNNDKIGEDVVVNNIEQKLHLLSTTKY--YFTLMTSAIKASKANDCCQFSNDMWES 440

Query: 297 FIKYVKNWMFSNFIIRPYFDQEFSLNEFIE 386
            + Y K + + NF I  +  ++ SL E  E
Sbjct: 441 IVSYTKEFFYKNFEI--WLKEDESLEEMYE 468


>AL132865-19|CAJ76951.1|  220|Caenorhabditis elegans Hypothetical
           protein Y62E10A.20 protein.
          Length = 220

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
 Frame = +3

Query: 264 LMEFPPIMWPSF--IKYVKNWMFSNFIIRPYFDQEFSLNEFIEASKHAVQIVSGALQNSD 437
           + + P +  P+F   + V N    +F    Y ++ F++   +  +   +  +S  L +  
Sbjct: 39  VFDTPQVSVPTFELSRRVGNLFAQSFYTLCY-EKSFTVESLVHGANKGIHSLSHFLADEK 97

Query: 438 FKTLEGLVDKDAINALKTAVSQLSVSQRQLLAIEKEDIFYAF 563
           +  +E L  KDA+  ++ A   LS      L    +DI  +F
Sbjct: 98  WDQMENLAVKDAVENMREARKGLSKQLENALRFSPDDILLSF 139


>AC024791-6|AAF60660.2|  782|Caenorhabditis elegans Human spg
           (spastic paraplegia)protein 7 protein.
          Length = 782

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +3

Query: 93  RNMNLVLRHVLTRQSLRLCDKIAYNNVQKQIAITSKCPIIQYRKYSEQGTETRKLPQLME 272
           R++ L  R  + R +LRL +K   N  +  I +  K P ++   Y E  + T  L + +E
Sbjct: 698 RDLLLEKRSDIERVALRLLEKEILNR-EDMIELVGKRPFVEKNTYEEMVSGTGGLDENVE 756

Query: 273 FP 278
            P
Sbjct: 757 LP 758


>Z93396-5|CAB07714.1|  633|Caenorhabditis elegans Hypothetical
           protein ZC15.7 protein.
          Length = 633

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 462 DKDAINALKTAVSQLSVSQRQLLAIEKEDIFYAFP 566
           DK+   AL  A  + S     LL+IEKED F + P
Sbjct: 497 DKNGRTALHAAAVESSACINVLLSIEKEDNFLSSP 531


>U23519-8|AAK31503.3|  734|Caenorhabditis elegans Hypothetical
           protein F26G1.6 protein.
          Length = 734

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 216 YRKYSEQGTETRKLPQLMEFPPIMWPSFIKYVKNW 320
           Y+  S++  ETR+LP L +F P     F+ Y   W
Sbjct: 645 YQLRSDREKETRRLPGLTDFSPNQL-FFLAYANTW 678


>DQ645956-1|ABG36764.1|  624|Caenorhabditis elegans molting protein
           MLT-4 protein.
          Length = 624

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 462 DKDAINALKTAVSQLSVSQRQLLAIEKEDIFYAFP 566
           DK+   AL  A  + S     LL+IEKED F + P
Sbjct: 488 DKNGRTALHAAAVESSACINVLLSIEKEDNFLSSP 522


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,829,882
Number of Sequences: 27780
Number of extensions: 283130
Number of successful extensions: 745
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)