Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l08f
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.78 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.78 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   1.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   1.8  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   5.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   5.5  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   5.5  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    21   7.2  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    21   7.2  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    21   7.2  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    21   7.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.2  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   9.6  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   9.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +3

Query: 156 IAYNNVQKQIAITSKCPIIQYRKYSEQGTE 245
           +A +     + +   CP  +YR Y++ G+E
Sbjct: 249 VAQDESTSLVCVAQACPTPEYRWYAQTGSE 278


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +3

Query: 156 IAYNNVQKQIAITSKCPIIQYRKYSEQGTE 245
           +A +     + +   CP  +YR Y++ G+E
Sbjct: 249 VAQDESTSLVCVAQACPTPEYRWYAQTGSE 278


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/34 (26%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 600 YPNHQKLLQLDKEMHKIYLLFLW-LTIAAGTQKV 502
           Y +H KL+++ +++   Y +  W L + +G  K+
Sbjct: 524 YDSHHKLIEIPEDLKYFYEIDNWMLDLNSGLNKI 557


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/34 (26%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 600 YPNHQKLLQLDKEMHKIYLLFLW-LTIAAGTQKV 502
           Y +H KL+++ +++   Y +  W L + +G  K+
Sbjct: 524 YDSHHKLIEIPEDLKYFYEIDNWMLDLNSGLNKI 557


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = -2

Query: 563 KCIKYIFFF 537
           KC++Y+FFF
Sbjct: 397 KCLEYLFFF 405


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = -2

Query: 563 KCIKYIFFF 537
           KC++Y+FFF
Sbjct: 397 KCLEYLFFF 405


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 57  KRYSLNQNNLTTFE 16
           K Y +N NN+T F+
Sbjct: 154 KEYQMNGNNITNFK 167


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 105 NSYFANNYQNIIQSK*KRYSLN 40
           N+Y  NNY N    K + Y++N
Sbjct: 95  NNYNNNNYNNNNYKKLQYYNIN 116


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 105 NSYFANNYQNIIQSK*KRYSLN 40
           N+Y  NNY N    K + Y++N
Sbjct: 95  NNYNNNNYNNNNYKKLQYYNIN 116


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 105 NSYFANNYQNIIQSK*KRYSLN 40
           N+Y  NNY N    K + Y++N
Sbjct: 95  NNYNNNNYNNNNYKKLQYYNIN 116


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 105 NSYFANNYQNIIQSK*KRYSLN 40
           N+Y  NNY N    K + Y++N
Sbjct: 95  NNYNNNNYNNNNYKKLQYYNIN 116


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 602 LIRIIKNYSNLIRKCIK 552
           L+R + N S+++R CIK
Sbjct: 43  LVRPVVNTSDVLRVCIK 59


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 602 LIRIIKNYSNLIRKCIK 552
           L+R + N S+++R CIK
Sbjct: 43  LVRPVVNTSDVLRVCIK 59


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 105 NSYFANNYQNIIQSK*KRYSLNQNN 31
           N+Y  +NY N   +    Y+ N NN
Sbjct: 87  NNYKYSNYNNYNNNYNNNYNNNYNN 111


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 105 NSYFANNYQNIIQSK*KRYSLNQNN 31
           N+Y  +NY N   +    Y+ N NN
Sbjct: 87  NNYKYSNYNNYNNNYNNNYNNNYNN 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,660
Number of Sequences: 438
Number of extensions: 3690
Number of successful extensions: 17
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)