Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l08f
         (615 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18810.1 68415.m02189 hypothetical protein contains Pfam prof...    30   1.4  
At2g36070.1 68415.m04429 mitochondrial import inner membrane tra...    29   3.2  
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden...    27   7.5  
At4g31200.3 68417.m04431 SWAP (Suppressor-of-White-APricot)/surp...    27   9.9  
At4g31200.2 68417.m04430 SWAP (Suppressor-of-White-APricot)/surp...    27   9.9  
At4g31200.1 68417.m04429 SWAP (Suppressor-of-White-APricot)/surp...    27   9.9  

>At2g18810.1 68415.m02189 hypothetical protein contains Pfam profile
           PF03754: Domain of unknown function (DUF313)
          Length = 234

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -3

Query: 517 WDTES*DTAVFSALIASLSTKPSRVLKSLFCSAPETI*TACLEASMNSFRLNS 359
           W   S D   F+ +++     P++  + L   A  T+ TACLEAS ++  ++S
Sbjct: 169 WSFHSPDMLFFALVLSDPDLAPTKDWECLNLLAKLTVETACLEASQDADTMSS 221


>At2g36070.1 68415.m04429 mitochondrial import inner membrane
           translocase subunit TIM44, putative contains similarity
           to Swiss-Prot:O35857 import inner membrane translocase
           subunit TIM44, mitochondrial precursor [Mus musculus];
           contains Pfam domian PF04280: Mitochondrial import inner
           membrane, translocase subunit TIM44
          Length = 469

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 354 DQEFSLNEFIEASKHAVQIVSGALQNSDFKTLEGLVDKDAI 476
           D  FSL +F+   + A++ V  A    D KTL+    K+ I
Sbjct: 321 DPSFSLPDFVSEIQEAIRPVLNAYSKGDAKTLKKYCSKELI 361


>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
           identical to RNA helicase [Arabidopsis thaliana]
           GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain, PF00098: Zinc knuckle
          Length = 747

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 468 DAINALKTAVSQLSVSQRQLLAIEKEDIFYAFPYQVGVI 584
           +A +  + A+S+LS+ QR   ++EK  I + FP Q  V+
Sbjct: 95  EADDGEELAISKLSLPQRLEESLEKRGITHLFPIQRAVL 133


>At4g31200.3 68417.m04431 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein related to DAN26 [Homo
           sapiens] gi|1770394|emb|CAA69591
          Length = 650

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 21/107 (19%), Positives = 42/107 (39%)
 Frame = +3

Query: 192 TSKCPIIQYRKYSEQGTETRKLPQLMEFPPIMWPSFIKYVKNWMFSNFIIRPYFDQEFSL 371
           +S  P+I +            +P  +  PPI  P F  +  +      + +P+     + 
Sbjct: 191 SSSMPMIHHPPNPMMSPSMNNVPGALAVPPIRQPPFPPFHDHHQLQQHLPQPHPFAPHAR 250

Query: 372 NEFIEASKHAVQIVSGALQNSDFKTLEGLVDKDAINALKTAVSQLSV 512
            +F + S HA + +SG L       L G++    +N  K ++    +
Sbjct: 251 PDF-DQSTHAFRGLSGPLPADVAMELNGVLGN--LNGTKESIKSAKI 294


>At4g31200.2 68417.m04430 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein related to DAN26 [Homo
           sapiens] gi|1770394|emb|CAA69591
          Length = 650

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 21/107 (19%), Positives = 42/107 (39%)
 Frame = +3

Query: 192 TSKCPIIQYRKYSEQGTETRKLPQLMEFPPIMWPSFIKYVKNWMFSNFIIRPYFDQEFSL 371
           +S  P+I +            +P  +  PPI  P F  +  +      + +P+     + 
Sbjct: 191 SSSMPMIHHPPNPMMSPSMNNVPGALAVPPIRQPPFPPFHDHHQLQQHLPQPHPFAPHAR 250

Query: 372 NEFIEASKHAVQIVSGALQNSDFKTLEGLVDKDAINALKTAVSQLSV 512
            +F + S HA + +SG L       L G++    +N  K ++    +
Sbjct: 251 PDF-DQSTHAFRGLSGPLPADVAMELNGVLGN--LNGTKESIKSAKI 294


>At4g31200.1 68417.m04429 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein related to DAN26 [Homo
           sapiens] gi|1770394|emb|CAA69591
          Length = 650

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 21/107 (19%), Positives = 42/107 (39%)
 Frame = +3

Query: 192 TSKCPIIQYRKYSEQGTETRKLPQLMEFPPIMWPSFIKYVKNWMFSNFIIRPYFDQEFSL 371
           +S  P+I +            +P  +  PPI  P F  +  +      + +P+     + 
Sbjct: 191 SSSMPMIHHPPNPMMSPSMNNVPGALAVPPIRQPPFPPFHDHHQLQQHLPQPHPFAPHAR 250

Query: 372 NEFIEASKHAVQIVSGALQNSDFKTLEGLVDKDAINALKTAVSQLSV 512
            +F + S HA + +SG L       L G++    +N  K ++    +
Sbjct: 251 PDF-DQSTHAFRGLSGPLPADVAMELNGVLGN--LNGTKESIKSAKI 294


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,623,187
Number of Sequences: 28952
Number of extensions: 243426
Number of successful extensions: 514
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)