Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l05r
         (380 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0EDI9 Cluster: Chromosome undetermined scaffold_90, wh...    31   7.3  
UniRef50_Q057F2 Cluster: Protoheme IX farnesyltransferase; n=1; ...    31   9.6  
UniRef50_Q9AW18 Cluster: Putative uncharacterized protein; n=1; ...    31   9.6  

>UniRef50_A0EDI9 Cluster: Chromosome undetermined scaffold_90, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_90,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 216

 Score = 31.1 bits (67), Expect = 7.3
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
 Frame = -1

Query: 149 ISFIKLSLFRLYI*NYLVFLFT-ILKAFYVIPIHSLYLS-INSRIN 18
           I+F    +FRLY   +LVFL+T  +K F V P ++L+ S IN+  N
Sbjct: 28  INFKTFEIFRLYQYIHLVFLYTNHVKMFAVYPYNNLFKSTINTNHN 73


>UniRef50_Q057F2 Cluster: Protoheme IX farnesyltransferase; n=1;
           Buchnera aphidicola str. Cc (Cinara cedri)|Rep:
           Protoheme IX farnesyltransferase - Buchnera aphidicola
           subsp. Cinara cedri
          Length = 306

 Score = 30.7 bits (66), Expect = 9.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 155 KTISFIKLSLFRLYI*NYLVFLFTILKAFYVI 60
           KTI FI + +  L+  N+L++ F  +K FY +
Sbjct: 225 KTIIFISICILNLFFFNFLLYFFGYVKFFYFL 256


>UniRef50_Q9AW18 Cluster: Putative uncharacterized protein; n=1;
           Guillardia theta|Rep: Putative uncharacterized protein -
           Guillardia theta (Cryptomonas phi)
          Length = 111

 Score = 30.7 bits (66), Expect = 9.6
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 145 EMVLFIIVIAATYYYMVLFRFIVN**KAVTYNRRQLFKKQIFFNY 279
           + +L + +I A +YY +     +N    V Y    LFKK++ F Y
Sbjct: 21  DYLLLLDLINALFYYKIFRNLTINDWIKVIYQNHALFKKRLSFTY 65


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 340,302,450
Number of Sequences: 1657284
Number of extensions: 5765876
Number of successful extensions: 10075
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10075
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 14868845845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)