Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l05r
         (380 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   0.99 
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    24   7.0  
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    24   9.3  

>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 27.1 bits (57), Expect = 0.99
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 279  IVKKNLFLEQLATVIRDSFSLVHNKS 202
            I+   +F+    TV+ D+FS +H KS
Sbjct: 1491 IISMYIFVNMFITVVFDNFSYIHTKS 1516


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 353 NFVINIGNLEKVCCST 306
           +F IN G+ EK+CC +
Sbjct: 120 SFTINPGSEEKICCES 135


>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +2

Query: 296 ICCWYCNKPFL 328
           ICC YC KPFL
Sbjct: 421 ICC-YCTKPFL 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,523,688
Number of Sequences: 5004
Number of extensions: 27708
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)