Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l05r
         (380 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98860-2|CAB11545.1|  337|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z82073-5|CAB63322.1|  333|Caenorhabditis elegans Hypothetical pr...    28   2.0  
AF016450-5|AAB65984.2|  280|Caenorhabditis elegans Serpentine re...    26   7.9  

>Z98860-2|CAB11545.1|  337|Caenorhabditis elegans Hypothetical
           protein Y26G10.2 protein.
          Length = 337

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 239 TVANCSRNKFFLTIHVLSVICCWYCN 316
           T  N    K+FL  H+ S+ C W C+
Sbjct: 45  TPKNFGSLKWFLVFHIFSITCQWLCS 70


>Z82073-5|CAB63322.1|  333|Caenorhabditis elegans Hypothetical
           protein W06D12.7 protein.
          Length = 333

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 263 KFFLTIHVLSVICCWYCNKPFLDCQY*LQSFIT 361
           K+FL+ H+ ++ C W C+   +D    + S IT
Sbjct: 47  KWFLSFHIFAITCQWLCSFLLIDFYTFVPSKIT 79


>AF016450-5|AAB65984.2|  280|Caenorhabditis elegans Serpentine
           receptor, class t protein68 protein.
          Length = 280

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +2

Query: 269 FLTIHVLSVICCWY 310
           F+T+H+ S+IC W+
Sbjct: 227 FVTVHITSMICVWH 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,268,710
Number of Sequences: 27780
Number of extensions: 151281
Number of successful extensions: 308
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)