Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l05r
         (380 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   1.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   1.6  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    20   8.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   8.5  

>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 303 QHMTDST*IVKKNLFLEQLATV 238
           ++ TD   IV+ NLF+  +AT+
Sbjct: 52  ENATDGPAIVRVNLFVRSIATI 73


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +2

Query: 281 HVLSVICCWYCN 316
           HV+   CCW C+
Sbjct: 6   HVVMSCCCWCCD 17


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 38  LNTMNEWVLHKMPLIL 85
           L  +++W LHKM  I+
Sbjct: 273 LTKIDKWFLHKMKNII 288


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 4/5 (80%), Positives = 5/5 (100%)
 Frame = +2

Query: 299 CCWYC 313
           CCW+C
Sbjct: 605 CCWHC 609


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,499
Number of Sequences: 438
Number of extensions: 2201
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)