Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l05f
         (434 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g52520.1 68414.m05929 far-red impaired responsive protein, pu...    28   3.1  
At5g24170.1 68418.m02844 expressed protein                             26   9.5  

>At1g52520.1 68414.m05929 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
           contains Pfam:PF03101 domain: FAR1 family
          Length = 703

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 102 IVKKNLFLEQLATVIRDSFSLVHNKSE*DHIIICSCDNYY 221
           +VK+ +  E     IRD F +++N+S  +   ICSC N+Y
Sbjct: 567 LVKERVRGESSRREIRD-FEVLYNRSVGEVRCICSCFNFY 605


>At5g24170.1 68418.m02844 expressed protein 
          Length = 163

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = -1

Query: 398 WFSLNYIPTYLQLILELMLK 339
           W+SL+YIP   +++ E+M++
Sbjct: 138 WYSLSYIPFARRMVSEIMIR 157


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,254,652
Number of Sequences: 28952
Number of extensions: 144551
Number of successful extensions: 214
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)