BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10l03r (777 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac... 29 0.74 SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 27 4.0 SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 26 5.2 SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 26 6.9 SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 26 6.9 SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 26 6.9 SPAC31G5.18c |||ubiquitin family, human C1ORF55 related|Schizosa... 25 9.2 SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 9.2 >SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor complex subunit Spp27|Schizosaccharomyces pombe|chr 3|||Manual Length = 233 Score = 29.1 bits (62), Expect = 0.74 Identities = 14/49 (28%), Positives = 24/49 (48%) Frame = -1 Query: 621 VKKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKS 475 + K L++ + + LPK K ++ PN L +K +V PT +S Sbjct: 183 MNKYLTNLMTKIPDDQLPKPQPKNEEPAAPNDLPKQEEKELVEPPTAES 231 >SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pombe|chr 2|||Manual Length = 497 Score = 26.6 bits (56), Expect = 4.0 Identities = 16/32 (50%), Positives = 21/32 (65%) Frame = -1 Query: 612 VLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKN 517 VL+ +KN ++ NLPK + KKKKV Q KN Sbjct: 70 VLNDFLKNFLELNLPKAS-KKKKVSLGVQDKN 100 >SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr 2|||Manual Length = 807 Score = 26.2 bits (55), Expect = 5.2 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 3/25 (12%) Frame = -3 Query: 709 KNEQLKVET---KTEHSENHHAPIV 644 K+E L+ ET KTEH++++H P V Sbjct: 130 KDEGLRTETIVKKTEHADSNHQPAV 154 >SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 583 Score = 25.8 bits (54), Expect = 6.9 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = -1 Query: 504 NIVRKPTMKSLLKHLTKNTVNP*KNYLLRA 415 + + KP KSL++ L ++T+NP + +L A Sbjct: 271 DFISKPPTKSLIRLLAEHTLNPVEKSVLLA 300 >SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharomyces pombe|chr 1|||Manual Length = 249 Score = 25.8 bits (54), Expect = 6.9 Identities = 18/64 (28%), Positives = 24/64 (37%) Frame = -1 Query: 570 PKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKSLLKHLTKNTVNP*KNYLLRATNHQAKNT 391 P+ +KK+KV N K ++ I +K K K K NY R N Sbjct: 15 PEVLLKKRKV-NERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNR 73 Query: 390 QQKN 379 KN Sbjct: 74 SAKN 77 >SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component |Schizosaccharomyces pombe|chr 3|||Manual Length = 809 Score = 25.8 bits (54), Expect = 6.9 Identities = 10/25 (40%), Positives = 17/25 (68%) Frame = -3 Query: 736 IQTHRAMK*KNEQLKVETKTEHSEN 662 I + ++K +NE+L+ + K EH EN Sbjct: 649 ISSLESLKRENEELREQLKVEHEEN 673 >SPAC31G5.18c |||ubiquitin family, human C1ORF55 related|Schizosaccharomyces pombe|chr 1|||Manual Length = 263 Score = 25.4 bits (53), Expect = 9.2 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = -1 Query: 552 KKKVLNPNQLKNHTKKNIVRKPTMKSLLKHL 460 K LN + LKN N+ R T+++LL+H+ Sbjct: 4 KTVFLNGDFLKNSVNVNLNRLATVETLLRHV 34 >SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 796 Score = 25.4 bits (53), Expect = 9.2 Identities = 8/23 (34%), Positives = 16/23 (69%) Frame = +1 Query: 28 NSNIKTRIWKDFLIFSTACSVLC 96 +S+++T+ W FL+ ++AC C Sbjct: 21 SSDLRTQFWLAFLLGASACVFFC 43 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,215,259 Number of Sequences: 5004 Number of extensions: 37410 Number of successful extensions: 142 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 138 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 142 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 375345278 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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