Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l03r
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac...    29   0.74 
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    27   4.0  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    26   5.2  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    26   6.9  
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    26   6.9  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    26   6.9  
SPAC31G5.18c |||ubiquitin family, human C1ORF55 related|Schizosa...    25   9.2  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   9.2  

>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
           complex subunit Spp27|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 233

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -1

Query: 621 VKKVLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKS 475
           + K L++ +  +    LPK   K ++   PN L    +K +V  PT +S
Sbjct: 183 MNKYLTNLMTKIPDDQLPKPQPKNEEPAAPNDLPKQEEKELVEPPTAES 231


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = -1

Query: 612 VLSHQVKNLMKRNLPKTTMKKKKVLNPNQLKN 517
           VL+  +KN ++ NLPK + KKKKV    Q KN
Sbjct: 70  VLNDFLKNFLELNLPKAS-KKKKVSLGVQDKN 100


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
 Frame = -3

Query: 709 KNEQLKVET---KTEHSENHHAPIV 644
           K+E L+ ET   KTEH++++H P V
Sbjct: 130 KDEGLRTETIVKKTEHADSNHQPAV 154


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 504 NIVRKPTMKSLLKHLTKNTVNP*KNYLLRA 415
           + + KP  KSL++ L ++T+NP +  +L A
Sbjct: 271 DFISKPPTKSLIRLLAEHTLNPVEKSVLLA 300


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 18/64 (28%), Positives = 24/64 (37%)
 Frame = -1

Query: 570 PKTTMKKKKVLNPNQLKNHTKKNIVRKPTMKSLLKHLTKNTVNP*KNYLLRATNHQAKNT 391
           P+  +KK+KV N    K   ++ I +K   K   K   K       NY  R       N 
Sbjct: 15  PEVLLKKRKV-NERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNR 73

Query: 390 QQKN 379
             KN
Sbjct: 74  SAKN 77


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 736 IQTHRAMK*KNEQLKVETKTEHSEN 662
           I +  ++K +NE+L+ + K EH EN
Sbjct: 649 ISSLESLKRENEELREQLKVEHEEN 673


>SPAC31G5.18c |||ubiquitin family, human C1ORF55
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 552 KKKVLNPNQLKNHTKKNIVRKPTMKSLLKHL 460
           K   LN + LKN    N+ R  T+++LL+H+
Sbjct: 4   KTVFLNGDFLKNSVNVNLNRLATVETLLRHV 34


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 28 NSNIKTRIWKDFLIFSTACSVLC 96
          +S+++T+ W  FL+ ++AC   C
Sbjct: 21 SSDLRTQFWLAFLLGASACVFFC 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,215,259
Number of Sequences: 5004
Number of extensions: 37410
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)